Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005070.1 Hibiscus syriacus cultivar Beakdansim tig00011381_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67839

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2680--2750
12
5.9
12
79
0
79
54
16
14
14
1.70
2680--2750
24
3.0
24
85
0
97
54
16
14
14
1.70
4138--4183
17
2.7
17
89
0
74
28
23
28
19
1.98
15703--15809
12
8.9
12
77
4
90
54
14
17
13
1.72
17178--17204
13
2.1
13
100
0
54
37
22
25
14
1.93
18224--18418
55
3.6
54
92
2
309
32
14
17
34
1.91
18636--19179
68
8.0
68
86
0
721
31
14
24
30
1.94
18635--19179
204
2.7
204
88
0
795
31
14
24
30
1.94
19204--19344
46
3.1
45
85
3
183
47
10
21
19
1.80
19200--19389
45
4.2
45
82
2
209
43
11
24
21
1.84
22529--23748
293
4.1
294
78
6
1075
35
15
16
32
1.90
22528--23748
602
2.1
587
78
6
1267
35
15
16
32
1.90
23984--24141
39
4.0
39
77
11
151
39
14
14
31
1.86
23946--24143
81
2.4
81
86
1
254
40
13
14
31
1.85
28661--28698
2
19.0
2
100
0
76
50
0
0
50
1.00
29151--29177
2
13.5
2
100
0
54
48
0
0
51
1.00
30179--30345
56
3.0
54
84
5
183
35
22
21
20
1.96
36376--36545
86
2.0
84
97
2
322
34
30
16
18
1.93
51995--52063
32
2.2
32
83
0
84
43
8
17
30
1.79
65713--65746
12
2.8
12
86
13
52
17
14
8
58
1.61
65713--65767
24
2.3
24
87
0
74
20
12
12
54
1.70

Tables:   1

The End!