genome.fa.s5071.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005071.1 Hibiscus syriacus cultivar Beakdansim tig00011384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85813

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447--481	17	2.2	16	90	10	54	31	11	5	51	1.61
3367--3399	15	2.1	16	88	5	50	30	12	9	48	1.71
3693--3730	18	2.2	18	95	4	69	5	36	0	57	1.21
4075--4104	15	2.0	15	93	0	51	16	50	13	20	1.78
4130--4163	9	3.8	9	92	0	59	0	52	8	38	1.33
5764--5795	16	2.0	16	100	0	64	25	18	18	37	1.94
6312--6358	20	2.3	20	78	7	60	14	21	14	48	1.80
6286--7646	181	7.6	182	91	3	2080	27	16	13	42	1.85
6286--7645	360	3.8	362	90	3	2072	27	16	13	42	1.85
9817--9921	52	2.0	53	96	1	194	43	15	17	23	1.86
10757--10798	22	1.9	22	95	0	75	40	9	11	38	1.75
10757--10806	22	2.3	22	89	0	73	44	8	10	38	1.68
16083--16139	3	19.3	3	82	10	73	61	1	0	36	1.07
29376--29411	15	2.3	15	95	4	63	27	5	2	63	1.30
33479--33505	7	3.9	7	100	0	54	44	14	11	29	1.80
34422--34816	215	1.8	215	87	0	592	35	16	17	30	1.92
34726--34863	44	3.1	44	74	10	118	35	17	14	32	1.90
35351--35395	1	45.0	1	81	0	54	0	8	0	91	0.43
35357--35394	10	3.7	10	93	6	67	0	7	0	92	0.40
35346--35402	18	3.3	18	82	7	73	1	12	0	85	0.66
35357--35402	11	4.2	11	94	5	76	0	10	0	89	0.50
35346--35392	10	4.8	10	84	10	53	2	10	0	87	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36034--36086	7	7.6	7	75	8	54	3	11	3	81	0.96
38410--38443	15	2.3	15	89	0	50	5	55	20	17	1.62
42947--42979	2	16.5	2	100	0	66	51	0	0	48	1.00
43146--43245	24	4.2	24	72	10	87	48	17	13	22	1.81
43139--43247	48	2.3	48	78	0	128	49	16	12	21	1.78
44385--44420	18	2.0	18	88	0	54	30	16	0	52	1.44
45730--45769	8	5.5	8	77	22	52	20	25	40	15	1.90
45727--45769	13	3.2	13	84	12	59	18	27	37	16	1.92
45751--45795	18	2.5	18	88	0	72	11	20	51	17	1.75
47740--47772	2	16.5	2	100	0	66	51	0	0	48	1.00
47939--48038	24	4.2	24	72	10	87	48	17	13	22	1.81
47932--48040	48	2.3	48	78	0	128	49	16	12	21	1.78
49179--49214	18	2.0	18	88	0	54	30	16	0	52	1.44
50524--50563	8	5.5	8	77	22	52	20	25	40	15	1.90
50521--50563	13	3.2	13	84	12	59	18	27	37	16	1.92
50545--50589	18	2.5	18	88	0	72	11	20	51	17	1.75
53171--53215	20	2.3	20	88	7	67	60	6	8	24	1.51
57320--57374	21	2.6	21	88	0	83	47	14	16	21	1.82
65116--65153	20	1.9	20	100	0	76	36	10	28	23	1.88
68908--68951	19	2.2	19	84	12	52	70	6	18	4	1.27
71556--71624	6	12.0	6	80	20	85	17	34	30	17	1.93
71557--71623	23	2.9	23	100	0	134	16	35	29	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71534--71624	17	5.4	16	80	16	87	20	32	28	17	1.96
72092--72146	25	2.2	26	83	9	69	43	5	3	47	1.44
72295--72341	21	2.2	21	88	0	67	31	36	2	29	1.70
73755--73783	15	1.9	15	100	0	58	24	0	13	62	1.32
73787--73929	48	3.1	46	68	24	113	20	8	23	47	1.77
73771--73942	89	1.9	88	88	3	256	21	7	22	48	1.74
74919--74976	26	2.3	26	93	3	100	27	13	44	13	1.82
76024--76049	2	13.0	2	100	0	52	50	0	0	50	1.00
85198--85237	21	1.9	21	84	0	53	47	17	7	27	1.74
85313--85361	26	1.9	25	84	12	64	63	20	6	10	1.47

Tables:   1

The End!