Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005072.1 Hibiscus syriacus cultivar Beakdansim tig00011389_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58995

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5543--5578
7
5.1
7
89
0
54
41
0
0
58
0.98
5536--5578
21
2.0
21
90
0
68
46
0
0
53
1.00
8456--8572
57
2.0
58
90
1
182
29
9
17
43
1.81
8922--9006
42
2.0
42
88
0
125
36
11
27
24
1.90
17436--17602
58
2.8
57
79
10
151
46
4
17
31
1.69
18956--19030
31
2.4
31
95
0
132
29
13
22
34
1.92
25337--25388
20
2.6
20
93
0
95
30
21
11
36
1.89
29388--30738
338
4.0
338
97
0
2582
35
21
15
28
1.93
29497--30816
674
2.0
667
92
2
2087
35
21
15
27
1.94
33064--33231
31
5.4
31
97
0
318
36
30
12
19
1.89
35088--35137
15
3.3
15
91
0
82
74
0
6
20
1.03
35088--35137
5
10.0
5
91
0
73
74
0
6
20
1.03
35221--35323
39
2.9
34
81
13
102
40
6
5
46
1.54
35250--35353
39
2.8
38
80
12
117
43
6
4
45
1.51
36183--36589
84
4.9
84
82
6
454
22
19
26
30
1.98
36136--36569
168
2.6
165
80
6
489
23
20
25
30
1.98
43062--43112
10
5.1
10
87
0
75
74
0
5
19
1.02
43062--43112
15
3.4
15
91
0
84
74
0
5
19
1.02
43199--43301
39
2.9
34
81
13
102
40
6
5
46
1.54
43228--43331
39
2.8
38
80
12
117
43
6
4
45
1.51
45525--45730
104
2.0
104
100
0
412
34
9
14
41
1.78
47865--47906
19
2.2
19
87
8
59
38
16
0
45
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49712--49751
2
20.0
2
100
0
80
50
0
0
50
1.00
52647--52716
35
2.0
35
100
0
140
20
11
20
48
1.79

Tables:   1

The End!