Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005073.1 Hibiscus syriacus cultivar Beakdansim tig00011391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66545

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11544--11581
19
2.0
20
89
5
60
55
5
2
36
1.37
14470--14515
13
3.3
13
84
9
56
17
43
21
17
1.88
14475--14522
8
6.5
8
79
18
59
16
39
22
20
1.92
17036--17151
24
4.8
24
83
6
137
25
14
18
41
1.89
17040--17151
48
2.3
48
87
6
156
25
14
19
41
1.89
19459--19507
22
2.2
23
85
3
64
28
2
2
67
1.13
21715--21747
16
2.1
16
88
5
50
66
0
0
33
0.92
24339--24432
46
2.0
47
97
2
181
41
3
31
23
1.70
29033--29070
19
2.1
18
85
9
51
39
7
7
44
1.63
29705--29820
43
2.7
42
85
2
151
32
19
12
34
1.90
30455--30479
13
1.9
13
100
0
50
16
16
16
52
1.76
30620--30721
13
7.2
13
74
16
87
2
21
1
73
1.06
30685--30721
4
9.5
4
83
16
51
2
21
0
75
0.92
30620--30721
28
3.6
28
78
13
102
2
21
1
73
1.06
30665--30784
24
5.0
24
72
16
77
4
20
3
72
1.16
30620--30705
10
8.8
10
70
13
63
2
20
2
74
1.04
30685--30746
23
2.7
23
78
12
63
3
24
1
70
1.10
30622--30744
13
9.4
13
67
24
55
3
21
2
72
1.11
30677--30759
23
3.7
21
70
22
62
3
21
2
72
1.12
31453--31510
7
7.7
7
83
11
62
10
5
3
81
0.97
31752--31827
5
15.6
5
79
16
54
6
15
0
77
0.96
31752--31827
14
5.2
15
73
19
63
6
15
0
77
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32619--32660
16
2.6
16
88
7
59
76
0
7
16
1.00
32669--32693
2
12.5
2
100
0
50
52
0
0
48
1.00
32970--33007
19
2.0
19
85
10
51
63
0
2
34
1.09
34306--36521
106
21.0
106
88
1
3069
24
17
24
34
1.96
37324--37444
22
5.5
22
91
0
197
22
13
26
38
1.91
38037--38117
23
3.5
22
76
14
83
6
13
8
71
1.29
38050--38122
16
4.7
15
68
17
51
5
13
8
72
1.25
38037--38126
46
2.0
46
93
4
155
6
13
8
71
1.31
41060--41101
16
2.6
16
88
7
59
76
0
7
16
1.00
41168--41210
22
2.0
22
81
9
52
62
0
6
30
1.21
41413--41450
19
2.0
19
85
10
51
63
0
2
34
1.09
41976--42072
37
2.6
37
86
0
140
30
12
16
40
1.85
48454--48497
22
2.0
22
86
8
63
65
0
11
22
1.24
49348--49393
22
2.1
22
84
8
58
58
2
10
28
1.43
50310--50360
21
2.4
21
96
0
93
15
43
15
25
1.86
51602--51701
37
2.7
36
83
4
119
44
13
13
30
1.81
52057--52099
18
2.5
17
85
7
61
25
4
2
67
1.22
56684--57220
183
2.9
183
93
0
905
27
20
21
31
1.98
58342--58455
36
3.2
35
70
9
97
28
17
7
45
1.76
58513--58670
39
3.8
39
68
21
104
28
18
13
38
1.90
58584--58902
106
3.1
105
87
3
443
31
19
11
37
1.87
58802--58877
36
2.1
36
90
0
116
22
21
15
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59044--59685
105
6.2
105
87
5
834
34
26
17
21
1.96
59125--59685
207
2.7
205
89
3
835
34
26
17
21
1.96
60218--60323
37
2.9
37
85
0
140
41
14
14
30
1.85
60675--60714
18
2.3
18
83
8
57
25
5
2
67
1.23
60674--60787
57
2.0
54
80
15
126
32
3
1
62
1.22
60781--60919
72
1.9
74
81
8
169
33
7
3
56
1.44
60965--61020
21
2.7
20
75
8
58
25
3
0
71
1.02
61150--61221
36
2.1
36
82
15
89
30
5
8
55
1.52
63753--63792
19
2.0
21
85
9
57
55
15
7
22
1.65
65434--65563
67
2.0
66
89
1
197
23
11
23
41
1.87

Tables:   1

The End!