Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005074.1 Hibiscus syriacus cultivar Beakdansim tig00011392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60858

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
814--859
14
3.3
14
84
0
65
50
26
17
6
1.70
1388--1567
20
8.9
20
74
8
159
21
15
23
38
1.92
1413--1545
61
2.2
61
93
1
223
22
12
24
39
1.89
1432--1599
40
4.2
40
81
6
144
20
15
25
39
1.91
1393--1579
101
1.9
101
89
2
295
21
14
24
39
1.91
3501--3534
3
12.0
3
87
12
54
35
0
0
64
0.94
3499--3534
11
3.3
11
88
11
56
36
0
0
63
0.94
3501--3534
17
2.0
17
100
0
68
35
0
0
64
0.94
8208--8237
14
2.1
14
93
0
51
43
3
6
46
1.46
11420--11526
18
5.9
18
95
0
169
18
20
30
29
1.97
20323--20366
21
2.1
21
86
0
61
22
15
25
36
1.94
28046--28092
18
2.7
18
87
9
62
46
12
12
27
1.78
28294--28340
20
2.4
20
86
10
62
10
19
36
34
1.86
34690--34762
29
2.4
30
84
4
94
43
6
17
31
1.75
38682--38717
2
18.0
2
88
0
54
44
50
5
0
1.25
38717--38760
2
22.5
2
95
4
81
50
0
0
50
1.00
38955--39000
23
2.0
23
83
8
58
34
21
21
21
1.97
38962--39043
43
1.9
43
87
0
119
32
20
24
21
1.98
39157--39308
45
3.2
45
65
24
114
38
21
7
33
1.81
39139--39340
98
2.1
98
94
2
352
38
20
7
34
1.81
41513--41550
17
2.2
17
100
0
76
10
23
47
18
1.79
41563--41607
19
2.4
19
85
7
56
24
28
24
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43934--43974
14
3.0
14
89
3
57
36
0
41
21
1.54
44268--44424
77
2.1
76
93
1
269
37
13
15
33
1.86
44381--44427
19
2.5
19
86
6
60
44
6
14
34
1.71
47334--47372
15
2.6
15
83
0
51
69
0
15
15
1.20
51901--51952
3
17.7
3
76
4
52
36
23
0
40
1.55
51901--51952
12
4.2
12
80
9
68
36
23
0
40
1.55
55973--56025
23
2.3
23
83
0
70
33
24
22
18
1.97

Tables:   1

The End!