Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005075.1 Hibiscus syriacus cultivar Beakdansim tig00011397_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69362

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7891--7923
3
11.3
3
87
6
50
36
0
0
63
0.95
13187--13236
22
2.3
22
89
0
73
38
10
8
44
1.68
14077--14184
54
2.0
54
94
0
189
25
17
14
41
1.88
15039--15098
24
2.5
24
81
13
70
38
1
0
60
1.07
16368--17742
182
7.6
182
93
1
2177
43
12
16
28
1.84
19880--19913
9
3.8
9
92
0
59
38
8
52
0
1.33
20325--20359
18
1.9
18
100
0
70
57
0
37
5
1.23
20325--20363
18
2.4
16
87
12
53
58
0
35
5
1.20
20665--20700
17
2.1
17
100
0
72
50
8
11
30
1.67
24164--24680
198
2.6
198
80
5
539
39
14
15
31
1.86
24675--24736
23
2.7
23
97
0
115
35
20
9
33
1.86
24695--24858
85
1.9
87
92
2
278
31
15
12
40
1.84
27114--27160
23
2.0
24
84
12
62
46
21
0
31
1.51
28455--28508
22
2.6
20
78
16
65
22
7
11
59
1.56
30392--30558
83
2.0
83
100
0
334
34
19
21
24
1.96
30862--31154
149
2.0
149
85
2
401
34
16
26
22
1.95
32660--32762
18
5.9
16
76
22
59
75
0
19
3
1.01
32680--32793
8
13.9
8
71
17
74
78
1
19
0
0.90
32680--32779
12
7.8
12
71
23
71
77
1
21
1
0.90
32680--32790
28
3.9
27
77
11
98
77
1
19
0
0.91
32722--32779
22
2.8
22
82
7
68
75
0
24
0
0.80
32681--32815
58
2.3
56
83
8
164
76
1
20
2
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32684--32815
36
3.5
38
73
14
105
76
1
19
2
0.97
32681--32815
29
4.7
27
73
14
101
76
1
20
2
0.97
33440--33493
28
1.9
28
88
0
81
38
29
5
25
1.79
34156--34423
75
3.5
76
86
5
337
31
16
10
41
1.83
34164--34440
76
3.6
75
83
6
292
32
16
10
40
1.82
34406--34978
39
14.6
39
85
4
634
29
17
15
36
1.91
34661--34755
47
2.0
48
93
2
165
24
24
16
34
1.95
34997--35138
60
2.4
60
81
5
180
26
28
18
27
1.98
36387--36523
68
2.0
68
100
0
274
51
11
4
32
1.58
36869--36906
2
19.0
2
100
0
76
50
0
0
50
1.00
38134--38184
27
1.9
27
84
11
70
52
1
1
43
1.23
39370--39576
112
1.9
110
85
4
290
22
22
15
40
1.91
40392--40466
29
2.5
30
87
12
100
12
17
0
70
1.16
40392--40466
20
3.6
21
74
17
68
12
17
0
70
1.16
40410--40461
9
5.4
9
80
19
61
9
13
0
76
1.01
52101--52126
2
13.0
2
100
0
52
50
0
0
50
1.00
52158--52209
2
26.0
2
100
0
104
50
0
0
50
1.00
53502--53576
3
25.0
3
89
5
116
62
1
1
34
1.12
53645--53690
2
23.0
2
100
0
92
50
0
0
50
1.00
54473--54518
14
3.5
13
83
16
60
13
2
6
78
1.04
54468--54522
18
3.2
17
73
16
51
14
1
7
76
1.08
56131--56172
22
1.9
22
85
0
57
35
2
2
59
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56416--56446
16
1.9
16
93
0
53
51
6
0
41
1.27
58420--58468
24
2.0
25
88
4
73
73
6
0
20
1.04
58460--58492
6
5.7
6
89
7
50
72
12
0
15
1.12
59700--59731
15
2.1
15
94
0
55
12
3
43
40
1.58
60353--60485
59
2.2
61
82
2
153
26
14
27
31
1.95
60633--60779
59
2.5
60
85
2
206
27
15
26
29
1.96
60118--60918
288
2.8
287
84
2
1052
31
16
23
27
1.96
60991--61184
58
3.5
57
75
11
175
36
19
11
33
1.87
63141--63185
19
2.3
20
85
11
58
2
15
4
77
1.02
63467--63494
2
14.0
2
100
0
56
50
0
0
50
1.00
65448--65520
24
3.0
24
79
0
83
23
8
16
52
1.70
65536--65600
32
2.1
32
94
5
116
24
0
33
41
1.55
65708--65750
2
22.5
2
90
9
72
46
0
0
53
1.00

Tables:   1

The End!