genome.fa.s5076.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005076.1 Hibiscus syriacus cultivar Beakdansim tig00011399_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87272

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1034--1084	17	2.9	16	82	11	57	27	31	19	21	1.97
7866--7915	23	2.2	23	81	0	55	40	2	2	56	1.22
8130--8243	56	2.0	56	85	6	151	29	16	16	36	1.91
9460--9504	18	2.6	17	89	6	65	35	2	33	28	1.70
10104--10197	31	2.9	31	75	14	82	41	31	12	13	1.83
10285--10377	37	2.5	37	92	1	159	37	39	11	10	1.77
10068--10570	258	1.9	254	89	5	769	36	28	12	22	1.90
11102--11156	24	2.3	24	84	3	67	16	21	14	47	1.82
11094--11156	24	2.7	23	75	4	65	15	22	12	49	1.79
11474--11526	21	2.5	21	81	0	61	22	26	16	33	1.96
11519--11644	20	6.2	20	80	7	146	39	20	18	21	1.92
11519--11629	42	2.7	40	88	4	150	39	20	18	20	1.92
12503--12556	24	2.2	24	93	0	90	20	18	20	40	1.91
14991--15079	20	4.4	20	73	13	85	39	23	17	19	1.92
15062--15145	33	2.5	33	90	1	123	44	17	22	15	1.87
15323--15359	14	2.6	14	86	0	56	48	21	0	29	1.50
17305--17385	33	2.4	33	79	2	90	45	22	19	12	1.83
17465--17608	20	7.5	20	83	9	183	20	18	21	39	1.92
19481--19535	20	2.8	20	91	0	83	49	23	16	10	1.77
19483--19552	20	3.5	20	88	0	77	41	24	17	17	1.89
19596--19642	20	2.3	20	88	0	67	21	19	23	36	1.95
20232--20308	20	3.8	20	75	5	82	24	20	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20295--20347	21	2.5	21	84	0	70	33	18	26	20	1.96
24191--24236	2	23.0	2	100	0	92	50	0	0	50	1.00
25920--26091	87	2.0	88	96	1	319	42	18	7	31	1.78
27551--27631	24	3.4	24	85	0	99	45	19	17	17	1.85
28554--28609	20	2.8	20	100	0	112	32	14	12	41	1.83
31951--32021	24	3.0	24	80	0	79	52	14	12	21	1.74
34307--34374	11	5.9	11	83	8	82	26	25	29	19	1.98
34305--34376	34	2.1	34	89	7	110	25	25	31	18	1.97
34318--34374	23	2.4	23	91	2	87	26	24	29	19	1.98
42404--42442	17	2.3	17	100	0	78	48	5	17	28	1.68
51444--51622	90	2.0	89	90	1	277	38	12	6	42	1.68
56131--56183	5	11.0	5	79	4	56	24	52	18	3	1.62
56139--56182	13	3.1	14	83	9	54	25	52	18	4	1.64
69628--69663	18	2.0	18	88	0	54	8	38	27	25	1.84
71623--71705	32	2.6	32	96	0	148	30	31	24	14	1.94
74859--74904	21	2.1	23	88	8	69	39	4	13	43	1.63
79653--79785	66	2.0	67	82	1	160	39	20	18	21	1.92

Tables:   1

The End!