Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005077.1 Hibiscus syriacus cultivar Beakdansim tig00011406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68577

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3165--3404
30
8.2
28
82
8
243
18
11
6
63
1.49
3165--3404
57
4.1
59
83
7
278
18
11
6
63
1.49
8773--8827
27
2.0
27
86
6
76
50
0
1
47
1.11
8882--8931
20
2.6
19
81
6
64
66
0
0
34
0.92
8786--9022
117
2.0
116
81
5
273
47
7
7
37
1.61
10761--11703
76
12.4
76
95
1
1676
34
21
19
24
1.96
17154--17264
17
6.6
16
70
13
71
3
21
0
74
0.96
17167--17251
25
3.4
25
83
8
84
4
22
0
72
1.02
17158--17256
41
2.3
41
91
5
153
4
22
0
73
0.99
17160--17262
9
11.8
9
75
18
85
3
22
0
73
0.99
17187--17252
24
2.6
24
88
7
87
4
21
0
74
1.00
17154--17260
25
4.4
22
76
16
56
3
21
0
74
0.97
17169--17256
17
5.3
16
75
17
83
4
20
0
75
0.98
20083--20172
36
2.5
36
78
7
94
55
8
16
18
1.67
22463--22500
14
2.8
14
84
4
51
71
0
0
28
0.87
22463--22504
22
1.9
22
90
9
68
71
0
0
28
0.86
22996--23052
29
2.0
29
86
6
80
50
0
1
47
1.11
23108--23149
20
2.2
19
86
4
57
64
2
0
33
1.07
23021--23253
120
2.0
120
83
6
305
46
8
8
37
1.63
23316--23340
2
12.5
2
100
0
50
48
0
0
52
1.00
24798--24845
15
3.3
15
80
16
57
50
0
2
47
1.12
24813--24871
21
2.5
24
84
10
70
54
0
1
44
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31482--31510
14
2.0
15
93
6
51
31
13
41
13
1.84
33878--33909
17
2.0
17
88
11
50
59
0
6
34
1.23
34026--34070
22
2.0
22
100
0
90
31
13
28
26
1.94
39468--39503
15
2.3
16
90
4
56
47
0
2
50
1.15
41106--41148
20
2.2
20
91
0
68
39
0
2
58
1.11
41223--41267
17
2.6
17
89
6
65
15
11
17
55
1.68
41499--41589
33
2.8
33
89
3
130
35
8
17
38
1.81
41786--41926
16
8.9
16
69
5
72
15
11
21
51
1.74
41798--41926
32
4.0
32
70
4
98
16
11
20
51
1.74
41798--41926
48
2.7
48
75
13
138
16
11
20
51
1.74
44170--44216
19
2.5
19
82
6
60
19
42
19
19
1.89
44877--45050
5
34.8
5
91
0
240
43
15
17
24
1.87
45051--45126
7
10.6
7
73
14
50
50
5
0
44
1.24
45049--45131
12
6.7
12
72
22
64
50
4
0
44
1.23
45051--45130
2
43.5
2
69
24
52
50
5
0
45
1.23
45051--45130
17
4.6
18
77
9
67
50
5
0
45
1.23
55754--55857
31
3.4
30
77
5
93
14
26
30
27
1.95
57838--57927
12
7.8
12
68
17
57
50
2
2
45
1.26
58324--58472
27
5.6
27
73
15
121
51
6
0
41
1.31
58329--58472
5
28.0
5
70
17
64
52
5
0
41
1.30
58336--58472
7
19.1
7
69
17
77
51
5
0
42
1.29
58349--58472
2
65.5
2
67
24
56
50
5
0
42
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59623--59662
20
2.0
21
90
5
64
32
20
20
27
1.97
59763--59803
20
2.0
21
85
4
57
41
34
9
14
1.79
60532--60580
20
2.5
20
86
3
64
30
12
4
53
1.57
67209--67333
55
2.3
54
89
5
191
32
23
16
28
1.96
68330--68364
14
2.4
14
85
4
52
5
65
20
8
1.40

Tables:   1

The End!