Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005078.1 Hibiscus syriacus cultivar Beakdansim tig00011407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106783

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15661--15685
12
2.1
12
100
0
50
48
44
0
8
1.32
34224--34264
19
2.2
19
86
0
55
21
29
24
24
1.99
36478--36579
31
3.2
31
71
15
89
34
20
23
21
1.97
36478--36604
66
1.9
66
88
3
193
33
22
23
19
1.97
44047--44755
381
1.9
381
96
0
1319
36
16
8
38
1.80
50163--50215
21
2.5
21
81
0
61
20
24
18
35
1.95
50207--50330
20
6.2
20
85
5
137
33
18
20
27
1.96
51193--51246
24
2.2
24
90
0
81
22
18
18
40
1.91
53719--53814
20
4.8
20
70
14
72
35
23
19
20
1.96
53758--53816
19
3.1
19
85
2
73
38
22
22
16
1.93
53841--53914
38
1.9
38
91
0
121
13
20
20
45
1.84
53822--53906
19
4.7
19
88
9
126
10
20
21
48
1.79
54012--54048
14
2.6
14
91
0
65
45
21
0
32
1.52
56076--56346
94
3.0
94
85
8
380
48
18
12
20
1.80
57130--57172
21
2.0
22
82
13
54
48
0
4
46
1.22
58020--58062
20
2.2
20
100
0
86
51
13
23
11
1.74
58026--58100
33
2.2
34
90
6
118
49
20
21
9
1.76
58718--58805
20
4.3
20
84
2
122
20
20
19
39
1.92
58718--58805
41
2.2
40
87
2
122
20
20
19
39
1.92
58802--58847
21
2.2
21
88
0
65
36
17
28
17
1.92
59606--59645
19
2.0
20
85
4
55
42
0
2
55
1.13
59606--59644
20
2.0
20
85
10
53
41
0
2
56
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60640--60686
25
1.9
25
91
4
78
40
14
0
44
1.46
61839--61882
23
2.0
22
90
4
70
50
15
0
34
1.45
70669--70724
29
1.9
29
82
7
69
39
12
0
48
1.41
71394--71517
66
1.9
66
91
0
203
33
20
23
22
1.98
73528--73553
5
5.2
5
100
0
52
0
19
57
23
1.40
76213--76249
17
2.1
18
85
14
51
70
0
0
29
0.88
76271--76323
19
2.8
19
76
0
52
58
1
1
37
1.20
78430--78466
1
37.0
1
88
0
56
0
5
0
94
0.30
79858--80102
30
8.2
30
85
6
302
17
12
6
62
1.50
79858--80092
89
2.6
88
85
5
303
17
11
6
64
1.47
79858--80102
59
4.1
60
86
2
305
17
12
6
62
1.50
85532--85587
28
2.0
28
86
10
80
51
0
1
46
1.11
85643--85684
20
2.2
19
86
4
57
64
2
0
33
1.07
85550--85787
120
2.0
118
82
6
293
46
8
7
37
1.63
85822--85864
22
2.0
22
85
0
59
51
0
0
48
1.00
85831--85867
18
2.0
18
89
5
56
48
0
0
51
1.00
87531--88474
76
12.4
76
95
0
1629
35
21
19
24
1.96
87531--88474
229
4.1
228
95
0
1629
35
21
19
24
1.96
87531--88474
305
3.1
305
94
0
1667
35
21
19
24
1.96
93945--94034
8
10.6
9
68
16
50
4
21
0
74
0.99
93955--94036
17
4.9
16
85
7
110
4
20
0
74
1.00
93939--94036
34
2.9
33
86
5
135
4
21
0
74
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93955--94036
33
2.5
33
93
2
137
4
20
0
74
1.00
96859--96942
36
2.3
36
80
8
91
54
7
17
20
1.66
99159--99199
21
1.9
21
90
5
64
73
0
0
26
0.84
99159--99213
14
4.1
13
76
19
51
72
0
1
25
0.94
99164--99212
25
2.0
25
88
8
73
71
0
2
26
0.97
99796--99847
20
2.6
19
79
8
59
65
1
0
32
1.04
99717--99941
120
1.9
121
83
6
298
47
8
8
36
1.63
99992--100034
2
22.0
2
85
4
61
48
0
0
51
1.00
101473--101535
24
2.6
24
76
14
67
53
0
0
46
1.00

Tables:   1

The End!