genome.fa.s5079.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005079.1 Hibiscus syriacus cultivar Beakdansim tig00011408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63544

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181--219	19	2.1	19	90	0	60	56	5	20	17	1.60
1507--1557	23	2.3	22	89	3	75	74	3	21	0	0.98
1506--1546	15	2.7	15	88	7	57	73	7	19	0	1.07
2733--2822	37	2.5	36	73	10	92	30	18	14	36	1.91
2780--3081	66	4.6	65	79	9	294	26	19	14	39	1.90
2780--3112	131	2.6	129	81	6	404	26	19	13	39	1.90
2780--3111	65	5.1	65	81	6	359	26	19	13	39	1.90
6483--6600	23	5.2	23	87	4	111	20	23	30	25	1.98
6482--6600	22	5.2	24	86	9	96	20	23	31	25	1.98
6494--6611	45	2.6	46	85	6	152	19	26	26	27	1.99
6494--6611	22	5.2	22	86	6	148	19	26	26	27	1.99
6463--6611	45	3.4	44	78	13	148	20	24	29	26	1.99
12661--12992	131	2.5	132	85	1	450	25	32	18	24	1.97
13663--13699	2	18.5	2	88	0	56	45	2	2	48	1.30
15022--15107	43	2.0	43	90	0	136	29	25	12	32	1.93
16898--16922	12	2.1	12	100	0	50	52	0	8	40	1.31
30781--30829	24	2.2	23	80	16	59	20	4	20	55	1.60
30788--30834	24	2.0	24	91	8	78	17	4	21	57	1.56
31247--31364	43	2.7	43	92	1	191	38	5	11	43	1.66
31387--31489	39	2.6	39	87	1	143	37	4	10	46	1.60
31513--31586	39	1.9	38	83	8	96	43	4	12	40	1.61
31417--31683	97	2.7	95	82	4	291	41	6	11	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31615--31787	39	4.4	40	80	8	176	41	5	13	39	1.68
31612--31787	79	2.2	78	83	5	219	40	5	13	40	1.68
31738--31835	49	2.0	49	86	4	135	39	8	12	39	1.72
38336--38387	17	3.1	17	71	17	54	32	0	5	61	1.20
39470--39986	83	6.3	83	77	6	401	32	17	17	32	1.93
39593--39991	166	2.4	165	82	2	478	31	17	17	33	1.94
47581--47605	2	12.5	2	100	0	50	52	0	0	48	1.00
51532--51601	2	35.0	2	100	0	140	50	0	0	50	1.00
58393--58431	20	1.9	20	84	5	51	46	17	7	28	1.76
60788--61108	156	2.1	156	98	0	615	34	21	28	15	1.94
62265--62296	14	2.3	14	94	0	55	37	3	0	59	1.13
62384--62415	10	3.2	10	90	0	55	50	3	0	46	1.17
62876--62928	22	2.3	23	80	6	63	64	1	5	28	1.27

Tables:   1

The End!