genome.fa.s5080.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005080.1 Hibiscus syriacus cultivar Beakdansim tig00011409_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86723

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2456--2698	56	4.3	55	82	9	228	34	4	22	37	1.75
2456--2698	29	8.7	28	81	11	232	34	4	22	37	1.75
3657--3684	8	3.5	8	100	0	56	25	25	21	28	1.99
10031--10219	29	6.6	28	81	10	170	38	6	19	36	1.77
18588--18662	23	3.3	23	67	20	66	54	4	2	38	1.33
18574--18674	46	2.2	46	94	0	175	51	4	4	38	1.45
19311--19400	24	3.8	24	80	0	108	56	14	10	18	1.65
19306--19397	48	1.9	48	86	0	130	56	14	9	19	1.65
19306--19412	24	4.4	23	74	13	90	56	14	9	19	1.66
19306--19408	48	2.2	48	83	1	127	56	14	9	19	1.66
23416--23587	44	3.9	44	72	1	148	32	19	27	20	1.97
23439--23524	43	2.0	43	83	0	109	31	18	26	23	1.97
23669--23755	12	7.3	12	71	11	63	55	16	10	18	1.69
23664--23772	48	2.3	48	87	3	148	54	16	10	19	1.70
23664--23766	24	4.3	24	81	1	118	54	16	9	19	1.69
27920--28089	44	3.9	44	79	6	177	31	22	25	20	1.98
28181--28274	24	3.9	24	73	8	75	51	12	11	24	1.73
28425--28475	17	3.1	16	73	21	52	35	13	11	39	1.82
30401--30445	13	3.5	13	81	0	54	4	31	40	24	1.75
33670--33894	112	2.0	112	98	0	432	33	9	10	46	1.70
33694--33917	112	2.0	111	88	5	294	35	10	10	43	1.74
41423--41476	18	3.0	18	94	0	90	29	16	0	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47439--47477	18	2.1	19	95	4	71	35	30	23	10	1.88
50325--50609	87	3.2	86	88	3	390	22	21	25	31	1.98
50353--50611	89	2.9	89	88	5	393	20	23	25	30	1.98
60245--60345	31	3.2	31	70	13	87	43	20	16	18	1.88
62248--62283	14	2.6	14	86	4	56	22	16	27	33	1.95
64300--64374	32	2.4	32	86	2	98	37	29	21	12	1.89
74901--74956	15	3.9	14	74	6	58	30	14	26	28	1.95
76456--76507	10	4.9	11	81	6	63	50	0	5	44	1.26
76454--76507	21	2.6	21	96	0	99	51	0	5	42	1.25
78982--80241	626	2.0	623	89	2	1920	38	10	11	39	1.76

Tables:   1

The End!