Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005083.1 Hibiscus syriacus cultivar Beakdansim tig00011417_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  344126

Tables:   1   2   

This is table  2  of  2  ( 185 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
234928--234979
20
2.6
20
81
6
61
25
26
15
32
1.95
236585--236628
22
2.0
22
86
0
61
59
0
2
38
1.10
236714--236756
19
2.3
19
79
0
50
48
0
4
46
1.22
238786--238831
21
2.2
21
96
0
83
41
23
13
21
1.88
238905--238954
21
2.4
21
93
6
84
20
34
18
28
1.95
240246--240358
24
4.7
24
76
13
106
24
23
15
36
1.94
240246--240464
24
9.0
24
68
18
93
23
21
16
37
1.94
242345--242386
2
21.0
2
100
0
84
50
0
0
50
1.00
243225--243274
25
2.0
24
81
11
57
16
0
10
74
1.08
244227--244309
39
2.1
39
97
0
157
36
13
14
36
1.85
248416--248454
20
2.0
20
85
10
53
28
12
5
53
1.60
251317--251355
19
2.0
20
90
5
62
15
12
30
41
1.85
252448--252489
20
2.0
20
86
4
57
21
14
28
35
1.92
253691--253730
20
2.0
20
85
0
53
30
10
0
60
1.30
254452--254522
31
2.3
31
97
0
133
42
22
11
23
1.86
256091--256136
22
2.1
22
84
8
58
34
4
2
58
1.30
256170--256199
15
2.0
15
100
0
60
33
33
13
20
1.91
259856--259912
3
19.3
3
79
16
66
59
0
0
40
0.97
259856--259910
22
2.5
24
77
20
73
60
0
0
40
0.97
259856--259924
21
3.3
22
86
9
92
56
0
1
42
1.08
260099--260535
75
5.8
75
98
0
829
37
21
18
22
1.94
260939--261949
112
9.0
113
88
2
1439
28
18
14
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
260941--261949
225
4.5
225
89
2
1467
28
18
14
38
1.90
260941--261949
449
2.2
451
88
2
1469
28
18
14
38
1.90
262350--262404
22
2.5
22
87
0
83
36
14
14
34
1.87
263495--263567
35
2.1
34
89
2
110
32
20
12
34
1.90
264524--264841
115
2.8
114
91
1
496
33
21
14
30
1.93
264744--264930
93
2.0
92
89
3
286
37
20
13
28
1.90
267192--267221
11
2.7
11
100
0
60
0
10
0
90
0.47
267192--267229
17
2.2
17
86
13
51
0
13
0
86
0.56
270509--270562
14
3.8
14
82
9
56
50
9
14
25
1.73
271939--271988
12
3.9
12
82
14
64
72
0
2
26
0.96
271938--271987
15
3.2
16
75
18
52
72
0
2
26
0.96
271939--271989
13
3.9
13
85
7
68
72
0
1
25
0.95
271937--271992
17
3.4
16
73
9
51
75
0
1
23
0.90
274159--274228
3
23.3
3
75
16
65
58
0
0
41
0.98
274159--274216
13
4.6
12
80
16
64
60
0
0
39
0.97
274155--274228
21
3.6
22
85
10
97
56
0
0
43
0.99
282339--282367
15
1.9
15
100
0
58
10
13
13
62
1.55
286370--286447
26
3.0
26
96
0
147
50
12
7
29
1.68
287440--287485
22
2.1
22
84
8
58
34
4
2
58
1.30
287919--287964
19
2.4
19
100
0
92
21
41
21
15
1.90
288616--288673
29
2.0
29
83
10
73
46
1
5
46
1.35
289219--289287
8
8.5
8
79
20
81
72
0
4
23
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
289219--289293
3
26.3
3
70
20
54
70
0
4
25
1.04
289213--289287
28
2.6
27
78
17
80
72
0
5
22
1.05
289219--289287
22
3.2
22
74
14
72
72
0
4
23
1.02
294024--294104
23
3.6
22
72
12
76
25
24
24
24
2.00
297802--297843
21
2.0
21
90
9
68
33
7
4
54
1.49
309742--309789
3
16.0
3
100
0
96
66
0
0
33
0.92
315271--315315
23
2.0
23
86
8
65
6
15
40
37
1.74
315345--315425
3
27.0
3
100
0
162
66
0
0
33
0.92
319444--319522
3
26.3
3
97
0
149
64
0
1
34
1.02
320292--320333
21
2.0
21
100
0
84
57
9
14
19
1.64
320925--321002
6
14.6
5
74
16
52
41
3
0
55
1.18
320935--321015
3
27.3
3
77
12
78
38
4
0
56
1.21
320939--321015
17
4.4
18
77
12
81
37
5
0
57
1.21
331392--331464
9
8.1
9
86
11
105
76
1
12
9
1.07
331396--331453
17
3.4
17
97
2
107
79
0
10
10
0.94
332743--333279
55
9.8
55
90
1
810
31
16
24
27
1.96
333456--333522
11
5.5
12
78
18
52
44
2
0
52
1.16
333459--333539
6
15.2
5
75
15
58
41
3
0
54
1.18
333472--333552
3
27.3
3
77
12
78
38
4
0
56
1.21
333476--333552
17
4.4
18
77
12
81
37
5
0
57
1.21
333459--333550
17
5.1
17
76
14
78
40
4
0
55
1.20

Tables:   1   2

The End!