genome.fa.s5084.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005084.1 Hibiscus syriacus cultivar Beakdansim tig00011422_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52679

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6270--6321	25	2.1	25	92	0	86	25	46	11	17	1.81
6409--6439	12	2.6	12	94	0	53	9	19	48	22	1.78
6437--6505	2	35.5	2	82	5	88	50	0	0	49	1.00
6450--6512	32	1.9	32	90	3	99	49	0	0	50	1.00
6609--6678	30	2.4	30	87	2	97	18	27	15	38	1.91
10935--10976	19	2.3	19	88	12	61	66	2	0	30	1.04
12741--12869	29	4.4	29	98	0	249	20	44	27	7	1.79
12880--12989	30	3.7	30	87	0	175	22	47	19	10	1.80
13637--13680	21	2.1	21	91	0	70	29	0	15	54	1.42
13657--13710	28	1.9	28	96	0	99	29	0	12	57	1.36
14086--14180	48	2.0	49	93	2	165	41	0	10	48	1.38
14187--14220	7	4.9	7	100	0	68	55	14	14	14	1.69
14216--14353	26	5.5	26	73	17	96	44	2	10	42	1.50
14166--14434	98	2.8	97	87	6	289	43	3	10	42	1.56
14287--14434	26	5.9	26	73	12	121	43	2	9	45	1.48
14576--14640	14	5.2	13	75	17	50	38	7	7	46	1.61
14587--14620	11	3.2	11	83	8	52	38	8	5	47	1.59
14587--14630	21	2.1	21	86	0	61	40	9	4	45	1.56
14625--14657	17	1.9	17	100	0	66	36	6	9	48	1.60
16888--16968	33	2.5	33	84	11	98	49	12	0	38	1.41
17244--17300	4	15.5	4	76	20	54	1	28	0	70	0.98
17244--17301	10	6.1	10	78	15	61	1	29	0	68	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17258--17301	14	3.1	14	90	3	70	0	29	0	70	0.88
17469--17564	50	2.0	50	93	4	169	22	19	38	18	1.93
17581--17607	13	2.1	13	100	0	54	29	7	55	7	1.55
17612--17706	29	3.3	29	95	0	163	23	32	30	13	1.93
17693--17764	32	2.2	32	90	0	117	8	30	30	30	1.87
17779--17816	19	2.0	19	100	0	76	10	21	36	31	1.87
18664--18756	21	4.5	21	75	4	91	39	18	23	18	1.92
18664--18756	41	2.3	41	98	0	177	39	18	23	18	1.92
18683--18817	41	3.3	41	81	6	123	37	21	20	20	1.94
18745--18859	20	5.7	20	82	6	115	31	26	18	24	1.97
18742--18879	41	3.4	41	78	6	145	34	24	16	23	1.95
19049--19090	22	1.9	22	95	0	75	21	42	16	19	1.89
19334--19397	20	3.2	20	84	4	76	14	18	23	43	1.86
20714--20758	18	2.5	18	88	0	72	26	44	15	13	1.83
21243--21309	20	3.4	20	81	2	73	38	23	22	14	1.92
21298--21354	14	3.7	14	75	20	60	49	22	15	12	1.78
21282--21355	33	2.2	34	95	4	134	45	21	17	14	1.84
21282--21340	19	3.4	18	73	22	63	45	20	18	15	1.85
21366--21431	18	3.9	18	84	11	95	9	19	24	46	1.78
23436--23503	19	3.8	19	85	14	101	47	17	22	13	1.82
23522--23559	20	1.9	20	94	0	67	15	21	23	39	1.92
24595--24648	24	2.2	24	90	0	81	24	16	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24823--24847	12	2.1	12	100	0	50	72	0	28	0	0.86
25293--25345	20	2.7	21	85	11	76	26	18	28	26	1.98
25354--25407	20	2.7	20	97	0	99	25	18	24	31	1.97
25294--25428	61	2.2	61	80	2	146	22	19	24	33	1.97
25478--25518	21	2.0	21	85	0	55	34	31	17	17	1.93
28540--28566	13	2.1	13	100	0	54	70	7	14	7	1.32
32891--32936	22	2.1	22	95	0	83	19	36	13	30	1.90
35163--35188	2	13.0	2	100	0	52	50	0	0	50	1.00
39795--39894	3	32.3	3	69	16	53	69	0	30	1	0.96
39814--39868	10	5.5	11	74	24	50	70	0	29	0	0.87
39796--39870	15	4.6	18	74	25	60	70	0	29	0	0.87
39795--39889	43	2.2	42	85	9	120	69	0	30	0	0.89
40966--41049	24	3.5	24	100	0	168	28	17	28	25	1.98
42253--42292	17	2.4	17	95	0	71	25	22	2	50	1.62
46780--46939	49	3.3	49	94	0	284	36	28	16	18	1.93
47003--47107	52	2.0	52	85	3	140	43	20	2	32	1.67
49132--49192	29	2.1	30	87	3	88	36	19	4	39	1.74
49718--49760	21	2.0	21	100	0	86	23	18	16	41	1.89

Tables:   1

The End!