Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005085.1 Hibiscus syriacus cultivar Beakdansim tig00011424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106123

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
661--699
19
2.1
19
90
0
60
33
2
2
61
1.23
8458--8482
12
2.1
12
100
0
50
16
8
0
76
1.02
12015--12070
11
5.2
10
83
12
67
87
0
12
0
0.54
12012--12069
17
3.5
17
90
4
100
86
0
13
0
0.58
12404--12445
19
2.2
20
91
4
68
30
4
11
52
1.59
13210--13469
84
3.1
84
94
1
443
30
13
22
34
1.92
14158--14829
113
6.0
113
95
0
1121
37
13
19
29
1.90
15153--15264
3
37.3
3
94
0
197
33
2
0
63
1.09
16641--16679
18
2.2
18
90
0
60
35
2
2
58
1.25
18320--18389
33
2.1
33
89
5
106
10
41
22
25
1.85
18332--18404
33
2.2
33
90
0
110
9
38
27
24
1.86
18386--18432
14
3.4
14
96
0
85
6
29
40
23
1.79
23842--23876
2
17.5
2
100
0
70
51
0
0
48
1.00
25372--25777
145
2.8
143
86
6
572
37
14
9
38
1.78
31873--31942
28
2.5
28
83
4
88
34
12
1
51
1.49
32607--32643
19
1.9
19
88
0
56
51
13
8
27
1.69
33885--33924
21
1.9
21
85
10
55
47
7
2
42
1.45
34943--34986
21
2.0
22
95
4
81
34
0
13
52
1.41
35284--35367
25
3.0
31
86
13
112
38
3
4
53
1.39
39394--39430
15
2.5
15
95
0
65
8
70
16
5
1.30
42085--42121
15
2.5
15
95
0
65
8
70
16
5
1.30
43548--43589
16
2.6
16
84
0
57
54
23
9
11
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43977--44086
55
2.0
55
94
0
193
46
8
4
40
1.54
44384--44456
32
2.3
31
86
6
101
34
24
16
24
1.95
45078--45128
26
2.0
26
100
0
102
11
29
19
39
1.87
48671--48732
30
2.1
30
96
0
115
25
4
9
59
1.49
53731--53756
2
13.0
2
100
0
52
50
0
0
50
1.00
57222--57246
2
12.5
2
100
0
50
48
0
0
52
1.00
60464--60545
9
9.9
8
72
19
53
59
0
0
40
0.97
60464--60525
25
2.4
26
78
7
65
62
0
0
37
0.95
60452--60535
33
2.5
34
96
1
152
59
0
0
40
0.97
66366--66407
22
1.9
22
90
0
66
23
14
23
38
1.92
68307--68353
21
2.2
22
88
3
69
21
34
25
19
1.96
69096--69285
32
6.0
32
79
6
190
31
19
17
31
1.95
72478--72524
21
2.2
22
92
3
78
23
29
23
23
1.99
72485--72529
22
2.2
20
88
11
65
20
31
20
28
1.97
73272--73481
32
6.6
32
83
7
223
32
19
15
32
1.93
73970--74081
12
9.3
12
91
7
183
41
9
0
48
1.36
75781--75805
12
2.1
12
100
0
50
60
0
0
40
0.97
76179--76228
19
2.6
19
81
9
57
40
0
2
58
1.10
76177--76229
20
2.7
20
85
5
63
39
0
1
58
1.09
76195--76247
19
2.7
19
82
5
52
43
1
1
52
1.23
76190--76236
19
2.3
21
78
14
53
34
2
2
61
1.20
78048--78083
18
2.0
18
89
10
56
52
2
0
44
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79515--79561
14
3.4
14
93
0
76
25
40
27
6
1.80
79543--79693
33
4.6
33
93
0
239
27
26
36
9
1.88
79567--79689
10
11.4
11
66
20
64
27
25
37
9
1.87
79738--79836
10
9.5
10
71
7
63
10
31
31
27
1.89
79783--79836
20
2.7
20
91
0
72
11
25
35
27
1.90
86387--86432
15
3.0
15
81
6
56
60
8
2
28
1.38
86679--86705
6
4.5
6
100
0
54
85
0
14
0
0.61
89739--89763
2
12.5
2
100
0
50
52
0
0
48
1.00
93531--93572
22
1.9
22
90
0
66
47
0
2
50
1.14
98081--98115
17
2.1
17
100
0
70
28
0
40
31
1.57
102763--102791
13
2.1
14
93
6
51
0
48
0
51
1.00
105708--105771
29
2.2
29
100
0
128
35
0
17
46
1.48

Tables:   1

The End!