genome.fa.s5086.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005086.1 Hibiscus syriacus cultivar Beakdansim tig00011426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80091

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--64	22	2.3	22	89	6	75	22	16	28	32	1.95
2810--2835	5	5.2	5	100	0	52	80	0	0	19	0.71
9320--9608	140	2.0	141	88	4	431	28	23	24	23	2.00
10113--10141	3	9.7	3	100	0	58	34	0	0	65	0.93
10156--10189	17	1.9	18	94	5	61	41	2	0	55	1.15
21590--21657	8	8.5	8	75	16	61	51	0	0	48	1.00
21605--21662	22	2.6	22	83	0	71	51	0	0	48	1.00
21607--21801	30	6.7	30	70	18	103	48	1	1	49	1.14
21789--21841	23	2.3	23	86	0	70	50	0	1	47	1.12
22170--22226	15	3.9	15	75	13	64	28	17	5	49	1.68
22818--22879	28	2.2	28	82	8	72	29	24	14	32	1.94
27053--27078	2	13.0	2	100	0	52	50	0	0	50	1.00
35809--35869	16	3.8	16	93	0	104	55	21	13	9	1.66
36967--37006	14	3.1	14	73	26	52	50	27	15	7	1.70
36958--37006	24	2.0	24	96	0	89	51	24	16	8	1.71
37173--37259	31	2.8	30	81	5	84	37	4	10	47	1.58
47085--47119	18	1.9	18	88	0	52	25	65	0	8	1.21
47082--47130	24	2.0	24	88	0	71	26	63	0	10	1.26
47034--47173	72	1.9	72	88	0	208	22	52	2	22	1.58
47106--48512	48	29.2	48	76	2	1170	23	47	3	25	1.67
47223--47310	27	3.5	27	68	17	80	23	47	5	22	1.72
47109--48505	96	14.5	96	87	1	1814	23	47	3	25	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48495--48795	48	6.3	47	79	3	226	21	40	9	28	1.84
48490--48795	96	3.2	96	83	2	285	21	40	9	28	1.84
48534--48795	144	1.8	144	82	3	339	21	39	9	28	1.86
58661--58700	20	2.0	21	90	5	64	45	15	5	35	1.68
58628--58754	53	2.4	52	94	5	220	48	14	5	32	1.66
58712--58753	21	2.0	21	95	0	75	42	16	4	35	1.69
63357--63396	20	2.0	21	90	5	64	45	15	5	35	1.68
63324--63450	53	2.4	52	96	2	227	48	13	5	33	1.65
63408--63449	21	2.0	21	95	0	75	42	16	4	35	1.69
65791--65831	21	2.0	20	85	4	55	26	31	12	29	1.92
69291--69341	22	2.3	22	96	0	93	15	25	43	15	1.86

Tables:   1

The End!