Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005087.1 Hibiscus syriacus cultivar Beakdansim tig00011431_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98974

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2537--2567
3
10.0
3
93
6
53
35
0
0
64
0.94
4926--5001
33
2.4
32
80
6
100
32
7
13
46
1.72
22066--22099
2
17.0
2
100
0
68
50
0
0
50
1.00
22195--22252
28
2.1
28
100
0
116
37
17
10
34
1.84
23756--23804
19
2.7
17
84
9
53
26
20
28
24
1.99
23785--23892
56
1.9
55
85
5
146
26
20
23
29
1.99
23785--23909
56
2.2
54
81
12
137
27
20
23
29
1.98
30775--30819
21
2.1
21
87
0
63
31
28
24
15
1.96
31256--31298
20
2.1
21
87
8
63
46
6
13
32
1.71
31788--31974
31
6.0
31
97
1
340
19
19
22
38
1.93
35287--35331
21
2.1
21
87
0
63
31
28
24
15
1.96
35769--35811
20
2.1
21
87
8
63
46
6
13
32
1.71
36301--36456
31
5.0
31
96
1
278
19
19
23
38
1.93
39499--39659
65
2.5
65
83
7
195
27
18
23
30
1.97
39504--39701
65
3.1
63
76
13
172
27
17
23
31
1.97
40232--40273
2
21.5
2
86
13
61
47
0
2
50
1.14
42934--43005
33
2.2
33
89
0
108
31
19
22
26
1.97
43115--43141
12
2.2
12
100
0
54
22
18
22
37
1.95
43480--43526
18
2.6
18
100
0
94
27
6
19
46
1.74
46717--46742
2
13.0
2
100
0
52
0
50
0
50
1.00
47264--47405
51
2.8
51
87
0
212
42
21
23
13
1.88
50657--50785
46
2.8
46
95
0
231
43
13
9
33
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61701--62228
260
2.0
260
97
0
1004
42
20
13
24
1.88
64062--64134
32
2.3
32
83
4
94
28
32
20
17
1.96
64073--64145
32
2.3
31
88
4
101
30
30
20
19
1.97
64188--64226
16
2.5
16
87
4
53
38
30
17
12
1.88
77729--77768
20
2.0
20
85
0
53
57
2
2
37
1.26
84380--84420
20
2.0
20
100
0
82
14
46
19
19
1.84
84599--84814
115
1.9
115
87
1
317
28
16
6
48
1.72
88975--89029
22
2.5
23
80
14
71
47
0
1
50
1.11
88975--89029
21
2.5
23
77
14
62
47
0
1
50
1.11
90261--90286
3
8.7
3
100
0
52
65
0
0
34
0.93
94975--95028
2
27.0
2
100
0
108
50
0
0
50
1.00

Tables:   1

The End!