genome.fa.s5089.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005089.1 Hibiscus syriacus cultivar Beakdansim tig00011445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89612

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1222--1263	19	2.3	19	87	4	59	21	11	45	21	1.84
1714--1824	53	2.1	53	94	0	195	31	16	16	36	1.91
3534--3574	3	13.7	3	100	0	82	65	0	0	34	0.93
4968--5061	46	2.0	46	97	0	179	17	7	13	61	1.54
9924--9978	28	2.0	28	85	0	74	32	23	14	29	1.94
10167--10224	29	2.0	30	82	3	73	20	20	12	46	1.82
13724--14130	201	2.0	200	91	0	661	41	12	8	37	1.73
16424--16505	41	2.0	41	85	0	110	18	12	13	56	1.68
16517--16541	3	8.3	3	100	0	50	32	0	0	68	0.90
16857--16916	28	2.1	30	84	6	79	55	15	13	16	1.70
18455--18502	18	2.7	18	96	0	87	20	12	31	35	1.90
18664--18702	19	2.1	19	85	9	53	33	7	5	53	1.51
30427--30460	17	2.0	17	94	0	59	52	0	2	44	1.16
33423--33472	17	2.9	17	90	0	82	8	12	18	62	1.53
35872--35901	13	2.4	13	94	5	53	23	0	23	53	1.46
37584--37612	15	2.0	15	93	6	51	24	6	13	55	1.63
38048--38082	17	2.1	17	100	0	70	22	11	14	51	1.74
40777--40834	28	2.1	28	86	0	80	36	20	5	37	1.75
41205--41248	21	2.1	21	86	0	61	50	2	11	36	1.51
42517--42645	21	6.3	20	71	16	68	31	20	18	30	1.96
42530--42705	21	8.5	21	74	5	90	27	21	18	32	1.96
42551--42722	41	4.2	41	71	8	143	29	20	18	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43323--43419	33	2.9	33	90	1	149	12	23	21	42	1.87
43398--43444	20	2.3	20	79	13	60	12	25	14	46	1.80
45709--45791	9	8.8	9	78	10	76	16	26	28	27	1.97
45710--45791	19	4.3	18	80	14	94	15	26	29	28	1.96
45710--45791	29	2.9	28	84	13	114	15	26	29	28	1.96
45794--45871	5	14.8	5	72	19	61	19	50	23	7	1.73
45794--45878	21	4.0	22	96	3	156	18	48	23	9	1.77
53049--53141	10	9.7	9	78	13	87	16	26	27	29	1.97
53049--53141	19	4.8	20	79	15	104	16	26	27	29	1.97
53049--53141	29	3.2	28	87	6	123	16	26	27	29	1.97
53069--53147	9	8.3	9	78	12	52	16	29	29	25	1.97
53144--53223	5	14.8	5	77	14	79	18	51	22	7	1.71
53144--53230	22	4.0	22	100	0	174	18	49	22	9	1.76
53144--53223	17	4.9	15	78	14	79	18	51	22	7	1.71
55364--55430	21	3.2	21	68	6	55	23	34	20	20	1.97
56761--56797	14	2.6	14	88	12	58	32	0	18	48	1.49
56904--57021	19	6.7	19	70	20	96	47	21	19	11	1.81
56920--57016	33	2.9	32	89	3	140	48	21	18	11	1.79
57027--57144	19	6.7	19	66	19	76	13	23	20	42	1.88
57031--57124	33	2.8	33	98	0	179	12	24	19	43	1.85
59020--59044	12	2.1	12	100	0	50	0	28	0	72	0.86
60051--60102	21	2.5	21	87	3	70	38	17	23	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60091--60169	20	3.9	20	77	9	70	35	22	18	22	1.96
60111--60179	21	3.3	21	76	8	70	40	21	17	20	1.91
60393--60480	20	4.4	20	75	5	97	39	22	20	17	1.92
60511--60584	19	4.5	16	83	16	66	13	20	18	47	1.82
60507--60574	19	3.8	19	87	12	101	13	22	17	47	1.82
62597--62710	19	6.5	19	66	20	79	47	19	17	15	1.83
62581--62645	20	3.3	19	76	6	67	44	23	16	15	1.86
62620--62731	33	3.4	33	88	1	163	47	20	17	14	1.82
62669--62726	14	3.9	14	77	16	62	48	22	17	12	1.80
62760--62817	14	3.8	14	75	20	62	10	17	24	48	1.78
62743--62834	33	2.8	33	93	0	148	14	18	21	45	1.84
62738--62834	19	5.6	19	69	22	70	14	19	21	44	1.86
62819--62873	20	2.8	19	83	8	65	16	23	23	36	1.94
63349--63393	18	2.5	18	88	0	72	13	15	44	26	1.83
64713--64766	20	2.8	20	80	2	65	48	22	16	12	1.80
64997--65040	22	2.0	22	90	0	70	20	15	43	20	1.88
65228--65362	20	6.7	20	85	5	155	24	18	25	31	1.97
65211--65362	40	3.8	40	78	7	155	24	17	25	32	1.97
65211--65361	61	2.5	61	82	3	189	24	17	25	32	1.97
65211--65365	81	1.9	82	85	4	215	23	17	24	34	1.96
65211--65383	81	2.1	81	81	5	197	23	19	24	33	1.97
65433--65473	21	2.0	21	85	0	55	34	29	17	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66482--66528	20	2.3	20	89	7	69	42	25	19	12	1.86
66540--66692	61	2.5	61	91	3	236	37	27	16	18	1.92
66540--66691	20	7.4	20	83	8	173	38	26	16	18	1.92
66540--66691	41	3.7	40	85	5	189	38	26	16	18	1.92
67250--67328	20	3.9	21	81	8	85	51	15	20	12	1.75
67327--67368	19	2.2	19	86	0	57	50	26	14	9	1.73
67367--67431	19	3.7	19	74	19	77	12	23	20	44	1.84
67372--67493	33	3.5	33	82	8	145	13	23	18	44	1.86
67429--67484	20	2.8	20	78	10	69	17	25	17	39	1.92
69189--69662	94	5.1	93	94	0	795	20	11	18	48	1.80
69495--69527	17	1.9	17	88	11	50	24	18	12	45	1.83
69765--69822	14	3.8	14	71	20	53	44	18	25	10	1.82
69750--69860	33	3.4	32	81	4	125	45	19	23	11	1.83
69905--69971	20	3.3	20	89	0	98	20	17	22	38	1.93
70452--70556	21	5.0	21	74	3	95	20	37	19	22	1.95
70449--70559	42	2.6	42	78	5	118	20	37	18	22	1.94
72061--72145	33	2.5	33	88	1	116	43	15	23	17	1.87
72162--72241	19	4.4	19	77	16	98	15	20	17	47	1.83
72162--72261	52	1.9	53	89	2	157	15	21	18	46	1.84
73128--73177	20	2.6	19	81	15	59	34	12	22	32	1.90
73208--73643	20	21.5	20	74	10	181	22	18	23	35	1.95
73312--73357	21	2.2	21	88	0	65	36	17	28	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73390--73469	42	1.9	41	85	7	108	21	16	23	38	1.92
73410--73582	61	2.8	61	86	6	208	19	17	22	40	1.91
73434--73582	41	3.7	39	82	6	156	19	18	22	39	1.92
73434--73625	61	3.2	62	79	9	168	19	17	22	39	1.92
73611--73704	42	2.3	42	76	9	95	22	21	21	35	1.96
82590--82621	14	2.2	15	94	5	57	71	6	15	6	1.26
83577--83635	30	2.0	30	93	6	102	33	5	16	44	1.70
83729--83758	15	2.0	15	100	0	60	26	33	26	13	1.93
83814--83856	21	2.0	21	100	0	86	13	44	27	13	1.83
83892--83934	21	2.0	21	90	0	68	25	20	25	27	1.99
83962--84001	20	1.9	22	90	10	66	37	37	10	15	1.80
84213--84299	33	2.6	33	96	0	156	28	14	29	26	1.95
85744--85784	21	2.0	20	86	9	57	29	24	21	24	1.99
85819--85857	20	2.0	20	94	0	69	17	25	41	15	1.89
85889--85966	20	4.1	20	72	24	78	12	26	37	23	1.91
85910--85937	14	2.0	14	100	0	56	14	21	35	28	1.92
85924--85966	22	2.0	22	90	0	68	13	27	37	20	1.91
86056--86113	29	1.9	31	93	6	102	44	17	5	32	1.70
88675--88746	34	2.2	33	85	7	92	22	29	15	33	1.94
88956--88994	21	1.9	21	94	5	71	10	10	41	38	1.73
89020--89061	20	2.0	21	90	4	68	28	26	21	23	1.99
89095--89132	20	1.9	20	100	0	76	15	26	44	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89170--89247	21	4.1	20	76	20	85	12	26	37	23	1.91
89171--89242	36	2.0	36	94	0	126	13	27	34	23	1.93
89192--89221	15	2.0	15	100	0	60	13	26	33	26	1.93
89337--89393	29	2.0	30	93	6	100	42	17	7	33	1.76
89427--89474	19	2.5	20	82	3	62	52	6	12	29	1.63

Tables:   1

The End!