Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000509.1 Hibiscus syriacus cultivar Beakdansim tig00000968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67844

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7923--8080
21
7.8
20
70
7
77
37
25
17
18
1.93
8048--8236
20
9.4
20
87
2
209
38
25
17
18
1.92
8929--8975
24
2.0
24
87
8
69
25
14
21
38
1.92
9149--9173
12
2.1
12
100
0
50
72
0
28
0
0.86
11456--11660
34
5.8
34
73
17
152
45
18
22
14
1.85
11470--11660
19
10.7
19
76
18
205
45
17
21
14
1.85
11470--11654
53
3.5
53
96
1
327
46
17
21
14
1.83
11650--11733
19
4.6
19
81
15
115
14
23
17
44
1.86
11840--11876
14
2.6
14
91
0
65
45
21
0
32
1.52
13799--13938
19
7.6
19
78
8
146
46
22
20
11
1.82
13815--13917
33
2.9
34
88
7
136
47
22
20
9
1.79
13834--13933
52
1.9
52
89
0
155
49
21
20
10
1.77
15920--16016
20
5.2
20
72
18
100
47
17
22
12
1.81
15967--16023
14
3.7
14
75
20
60
43
22
24
8
1.81
15918--16040
33
3.5
33
88
10
165
47
18
22
11
1.81
16057--16127
21
3.4
21
80
7
99
12
22
19
45
1.84
16229--16277
14
2.8
19
65
28
54
46
20
24
8
1.77
16207--16277
33
2.2
33
94
0
124
47
18
22
11
1.80
16646--16918
20
13.6
20
88
3
388
19
19
27
33
1.96
22018--22078
25
2.5
25
82
17
83
31
0
0
68
0.89
22018--22080
8
7.8
8
73
19
51
30
0
0
69
0.88
26642--26670
3
9.7
3
100
0
58
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26807--27680
113
7.7
113
89
4
1154
29
19
14
37
1.91
28233--28557
83
3.9
83
91
1
517
34
20
13
31
1.91
40264--40300
15
2.7
15
88
12
53
62
8
5
24
1.44
40291--40341
18
2.9
17
75
16
50
72
1
0
25
0.95
42507--42571
3
21.7
3
100
0
130
66
0
0
33
0.92
52824--52869
18
2.5
19
82
10
60
60
4
10
23
1.47
61795--61850
29
2.0
29
89
3
87
64
5
7
23
1.40
62760--62807
22
2.2
22
85
7
62
62
10
10
16
1.53
62760--62819
23
2.7
23
82
7
70
56
11
11
20
1.65

Tables:   1

The End!