genome.fa.s5090.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005090.1 Hibiscus syriacus cultivar Beakdansim tig00011446_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52024

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30--115	37	2.3	38	89	4	138	19	19	18	41	1.90
8180--8243	22	3.0	22	88	6	87	29	14	14	42	1.84
15502--15540	19	2.1	19	95	4	71	25	33	0	41	1.56
19754--19807	25	2.2	25	93	0	90	35	5	7	51	1.53
22930--23042	35	3.2	34	87	2	145	42	19	1	36	1.62
24099--24175	35	2.2	35	88	0	118	36	0	20	42	1.53
29860--29908	15	3.3	15	94	5	82	28	14	6	51	1.66
33730--33762	15	2.3	15	89	5	50	18	6	9	66	1.40
34328--34466	21	6.8	20	70	8	73	35	25	17	20	1.95
34434--34627	40	4.8	39	83	3	199	36	26	18	18	1.94
34434--34626	60	3.2	60	82	3	235	36	26	18	18	1.94
34434--34624	20	9.5	20	86	2	96	36	26	18	18	1.94
35006--35076	33	2.2	33	94	0	124	11	23	16	47	1.79
35156--35263	21	5.7	20	74	15	95	45	19	24	11	1.82
35156--35232	21	3.8	20	82	5	100	45	16	24	12	1.83
35155--35232	41	1.9	41	97	0	147	44	16	25	12	1.83
35168--35274	19	5.7	19	71	16	80	46	20	22	10	1.80
35270--35334	19	3.7	19	70	19	68	12	23	20	44	1.84
35273--35356	33	2.5	33	98	0	159	11	23	17	46	1.82
35292--35348	14	3.7	14	70	20	51	10	24	21	43	1.83
35333--35397	21	3.1	21	82	4	96	10	26	15	47	1.78
35332--35395	20	3.2	20	82	4	92	12	25	15	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37094--37748	93	7.1	93	98	0	1258	21	12	19	46	1.82
37793--37921	19	7.2	20	72	19	74	48	27	14	8	1.73
37809--37921	19	6.5	19	76	19	129	49	27	15	7	1.71
37828--37921	33	2.8	33	90	4	145	50	26	15	7	1.71
37879--37905	14	1.9	14	100	0	54	48	29	14	7	1.71
37809--37921	52	2.2	51	82	7	138	49	27	15	7	1.71
37917--38089	19	9.6	19	77	12	168	10	19	23	46	1.81
37939--37995	14	3.7	14	77	20	60	10	21	22	45	1.82
37917--38089	33	4.8	38	82	5	168	10	19	23	46	1.81
40014--40049	14	2.6	14	95	0	63	33	0	22	44	1.53
40140--40260	19	6.8	19	77	18	145	47	16	23	13	1.82
40167--40221	14	3.6	14	73	21	56	45	20	23	10	1.82
40148--40240	33	2.8	33	100	0	186	46	18	22	12	1.83
40313--40367	14	3.6	14	73	21	56	10	23	20	45	1.82
40327--40492	53	3.2	53	95	2	291	13	21	18	46	1.83
40255--40431	86	2.1	86	90	0	273	16	24	18	41	1.90
40275--40506	86	2.7	90	90	7	358	13	22	18	45	1.84
40293--40506	33	6.2	33	76	15	220	13	22	18	45	1.83
40327--40525	53	3.8	53	87	5	196	13	21	19	45	1.84
42788--42812	12	2.1	12	100	0	50	0	28	0	72	0.86
42986--43032	24	2.0	24	87	8	69	38	21	14	25	1.92
43721--43949	20	11.4	20	87	1	253	19	17	25	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44515--44569	23	2.4	24	78	9	60	40	1	0	58	1.09

Tables:   1

The End!