genome.fa.s5091.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005091.1 Hibiscus syriacus cultivar Beakdansim tig00011448_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62545

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6631--6683	25	2.1	25	100	0	106	28	16	18	35	1.93
6748--6987	117	2.1	117	99	0	471	37	17	17	27	1.93
8856--8937	37	2.2	37	97	0	155	10	21	42	24	1.85
8867--8945	37	2.1	37	95	0	140	12	18	43	25	1.86
16240--16292	15	3.6	15	74	5	63	49	0	13	37	1.42
16255--16303	14	3.4	14	73	15	55	44	0	20	34	1.52
16239--16303	29	2.2	29	97	0	121	46	0	18	35	1.50
23818--23845	14	2.0	14	100	0	56	7	0	42	50	1.30
25985--26160	21	8.6	21	75	8	130	14	22	26	36	1.93
25985--26172	41	4.6	41	91	4	299	13	23	25	37	1.92
25985--26172	82	2.3	82	97	0	349	13	23	25	37	1.92
26591--26826	121	1.9	122	86	2	332	19	16	17	46	1.84
29358--29382	12	2.1	12	100	0	50	40	8	36	16	1.77
29411--29466	29	1.9	29	92	0	94	10	37	28	23	1.88
29470--29544	33	2.3	33	83	4	89	10	38	22	28	1.87
29483--29554	33	2.2	32	80	7	81	12	36	25	26	1.91
29536--29568	14	2.4	14	94	0	57	6	30	39	24	1.79
30143--30182	17	2.3	18	91	4	64	37	0	0	62	0.95
32516--32583	22	3.0	22	77	14	68	42	7	0	50	1.30
37882--38014	66	2.0	66	97	0	248	18	21	28	31	1.97
46803--46861	13	4.2	13	74	19	55	67	16	3	11	1.34
46821--46877	18	3.4	18	70	25	61	66	22	3	7	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46811--46877	31	2.1	32	97	2	127	67	20	2	8	1.32
47129--47193	24	2.8	24	72	17	57	52	20	12	15	1.74
62509--62537	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1

The End!