genome.fa.s5092.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005092.1 Hibiscus syriacus cultivar Beakdansim tig00011449_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117777

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2896--2941	17	2.8	17	90	3	67	39	6	26	28	1.81
4887--5102	108	2.0	108	99	0	423	22	12	23	42	1.87
17989--18042	27	2.0	27	85	3	74	25	14	7	51	1.68
22234--22265	14	2.3	14	94	0	55	34	34	0	31	1.58
47171--47285	57	2.0	57	96	0	212	40	3	9	46	1.54
49708--49878	59	2.9	58	78	8	193	30	15	16	36	1.91
61951--61989	18	2.2	18	86	9	53	69	5	12	12	1.35
63276--63317	14	3.0	14	80	10	50	40	2	0	57	1.12
63779--63832	24	2.3	23	81	15	65	62	5	3	27	1.34
65926--66094	27	6.3	27	74	6	137	33	27	18	20	1.96
69656--70713	228	4.6	228	86	0	1234	30	24	24	20	1.99
69656--70765	456	2.4	456	83	0	1360	30	24	24	20	1.99
71557--71601	20	2.2	20	96	0	81	53	4	15	26	1.61
73678--73825	15	9.5	15	80	10	172	47	0	2	50	1.17
73805--73957	32	5.4	31	67	28	117	38	0	9	52	1.33
73828--73924	22	4.0	22	70	23	77	36	0	12	51	1.40
73805--73973	54	3.1	54	92	1	277	37	0	10	52	1.35
73723--73880	67	2.3	67	84	7	196	43	0	5	50	1.30
73978--74292	32	10.8	32	75	18	273	33	0	12	53	1.38
74016--74058	22	2.0	22	100	0	86	34	0	13	51	1.42
73984--74404	54	7.6	54	73	15	383	34	0	12	53	1.38
73904--74404	170	3.0	167	93	3	864	34	0	11	53	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74186--74228	22	2.0	22	95	0	77	37	0	11	51	1.39
74212--74291	14	5.0	16	66	22	60	33	0	11	55	1.36
73904--74404	166	3.0	165	93	3	867	34	0	11	53	1.38
74352--74394	22	2.0	22	100	0	86	34	0	13	51	1.42
74419--74477	31	1.9	31	89	0	91	44	10	6	38	1.65
75520--75558	19	2.1	19	86	13	55	58	5	5	30	1.41
76066--76135	24	2.9	24	80	0	77	48	15	11	24	1.78
76041--76135	48	2.0	47	83	2	118	47	15	13	23	1.81
76842--76953	29	3.9	29	93	0	188	42	24	5	27	1.76
80846--80884	19	2.1	19	86	13	55	58	5	5	30	1.41
82158--82281	29	4.3	29	91	0	194	45	22	4	26	1.72
82657--82704	21	2.3	21	92	0	78	22	18	20	37	1.94
84831--84900	36	1.9	36	94	5	124	28	20	15	35	1.93
90751--90873	36	3.4	36	98	0	237	39	19	8	32	1.81
92180--92223	14	3.2	14	96	3	81	65	0	0	34	0.93
92180--92245	27	2.5	27	83	13	77	62	3	0	34	1.11
98462--98497	7	5.1	7	100	0	72	30	0	27	41	1.56
99768--99881	60	1.9	59	82	5	140	35	13	11	39	1.80
100170--100216	20	2.3	20	85	0	67	34	25	14	25	1.94
100060--100785	97	7.5	97	78	6	736	36	20	13	29	1.91
100266--100314	20	2.5	20	93	0	80	28	26	18	26	1.98
100330--100370	20	2.0	20	100	0	82	39	19	17	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100407--100467	20	3.0	20	90	0	104	42	19	13	24	1.87
100060--100877	194	4.2	194	84	3	1013	37	20	13	28	1.91
100286--100447	77	2.1	77	95	0	288	37	20	14	27	1.92
100330--100558	117	2.0	116	85	5	309	37	20	13	28	1.90
100468--100506	20	2.0	20	94	0	69	33	23	10	33	1.88
100447--100639	77	2.5	77	84	6	207	37	19	13	29	1.91
100527--100564	20	1.9	20	88	0	58	39	18	15	26	1.91
100601--100682	20	4.1	20	95	0	137	40	17	14	28	1.88
100524--100759	117	2.0	118	89	0	366	37	18	14	29	1.91
100495--100647	77	2.0	76	86	6	213	39	19	13	27	1.90
100719--100759	20	2.0	20	95	0	73	41	17	17	24	1.89
100796--100856	20	3.0	20	90	0	95	42	19	13	24	1.87
100641--100836	78	2.5	78	89	0	295	36	18	15	29	1.91
100233--100911	97	7.0	97	75	8	551	37	20	14	28	1.91
100641--100862	78	2.9	77	85	4	207	36	18	14	29	1.91
100913--100963	21	2.4	22	83	3	59	25	15	25	33	1.95
100931--100977	21	2.2	22	84	3	60	25	14	25	34	1.94
110237--110610	187	2.0	188	87	3	538	27	23	23	25	2.00
111118--111150	17	1.9	17	93	0	57	39	3	0	57	1.14

Tables:   1

The End!