genome.fa.s5093.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005093.1 Hibiscus syriacus cultivar Beakdansim tig00011452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82380

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1525--2271	176	3.9	185	79	12	583	31	13	16	39	1.87
1647--2293	198	3.2	197	85	7	869	31	13	15	39	1.87
7385--7434	15	3.3	15	94	0	82	32	2	48	18	1.59
7980--8603	198	3.2	198	96	0	1149	30	16	15	37	1.90
8936--8985	19	2.6	19	93	0	82	58	10	2	30	1.42
10132--10168	18	2.1	18	95	5	67	32	5	8	54	1.53
10470--10504	18	1.9	18	100	0	70	5	37	0	57	1.23
10990--11017	14	2.0	14	100	0	56	35	7	0	57	1.26
10991--11035	23	1.9	24	86	13	67	35	4	0	60	1.17
13088--13736	182	3.6	181	86	2	845	27	16	13	42	1.86
14353--14405	21	2.5	21	93	0	88	30	32	20	16	1.95
14401--14528	19	6.3	20	72	16	111	21	19	19	39	1.93
14411--14525	61	1.9	61	98	0	221	22	20	19	38	1.94
15271--15295	6	4.2	6	100	0	50	0	16	48	36	1.46
15384--15522	19	6.9	19	73	12	116	37	19	20	23	1.94
15395--15509	61	1.9	61	98	0	221	38	19	20	22	1.94
15456--15541	40	2.1	42	91	4	140	37	23	19	19	1.94
15384--15521	61	2.3	62	87	5	219	37	19	19	23	1.94
15385--15547	19	8.0	21	73	11	99	36	20	20	22	1.95
15513--15581	33	2.1	33	94	0	120	31	28	20	18	1.96
16993--17017	3	8.3	3	100	0	50	68	0	0	32	0.90
21239--21280	21	2.0	21	86	13	59	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27269--27293	10	2.5	10	100	0	50	56	0	0	44	0.99
31753--31866	29	3.9	29	92	0	165	16	31	28	23	1.96
31937--31977	14	2.9	14	96	0	73	7	24	41	26	1.81
31967--32015	10	4.6	11	78	14	50	12	28	32	26	1.92
32207--32290	34	2.5	35	80	3	91	16	17	5	59	1.56
32269--32337	17	4.1	17	73	3	50	18	13	7	60	1.55
32529--32773	65	3.8	65	86	1	303	31	23	15	29	1.95
35069--35113	20	2.2	21	84	4	56	75	4	13	6	1.15
37731--37782	20	2.6	20	100	0	104	23	21	17	38	1.93
37769--37919	21	7.3	21	71	14	125	23	21	21	33	1.97
37776--37913	42	3.3	42	93	2	244	22	21	21	34	1.97
38501--38549	6	8.2	6	100	0	98	0	16	48	34	1.46
38647--38701	21	2.8	20	80	5	67	32	21	21	23	1.98
38716--38768	21	2.5	21	90	0	79	20	20	30	28	1.98
41368--41409	3	14.0	3	89	0	66	33	0	4	61	1.17
42529--42566	19	2.0	19	100	0	76	36	5	21	36	1.76
51530--51577	23	2.1	23	88	0	69	35	12	18	33	1.89
51993--52042	23	2.2	23	88	0	73	38	24	4	34	1.74
52388--52453	25	2.6	25	75	0	78	42	12	9	36	1.74
54927--55264	183	1.8	183	91	1	561	34	16	13	35	1.89
56731--56811	3	27.0	3	75	0	72	23	34	6	35	1.80
56735--56823	12	7.4	12	84	0	88	21	34	7	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56735--56825	18	5.1	18	76	0	74	20	34	7	37	1.82
56747--56823	36	2.1	36	90	0	118	20	35	9	35	1.85
56841--57480	197	3.2	198	97	0	1201	32	16	14	36	1.89
58692--58734	20	2.3	18	85	14	61	20	16	11	51	1.75
58697--58743	20	2.4	19	82	10	67	19	17	10	53	1.72
58876--58922	20	2.3	20	89	10	78	17	17	10	55	1.69
58664--59134	182	2.6	181	89	1	696	25	16	14	42	1.87
58664--59136	179	2.6	180	89	2	689	26	16	14	42	1.87
59201--59680	229	2.1	228	96	0	888	39	7	8	44	1.62
60446--60483	16	2.4	17	82	13	53	21	23	0	55	1.44
70672--70722	22	2.3	22	96	0	93	15	43	25	15	1.86
76559--76600	21	2.0	21	95	0	75	35	4	16	42	1.69
76612--76651	20	2.0	21	90	5	64	35	5	15	45	1.68
76558--76684	53	2.4	53	96	2	229	33	5	13	48	1.65
81284--81321	19	2.0	20	89	5	60	36	5	15	42	1.70
81237--81354	52	2.3	52	88	9	174	33	5	15	45	1.70

Tables:   1

The End!