Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005094.1 Hibiscus syriacus cultivar Beakdansim tig00011457_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88018
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:299 original size:25 final size:27
Alignment explanation
Indices: 271--321 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
261 GTTTAAAAAT
*
271 AAAACTT-AAAATAAAA-ACAAAAACA
1 AAAACTTGAAAATAAAAGAAAAAAACA
296 AAAACTTGAAAATAAAAGAAAAAAAC
1 AAAACTTGAAAATAAAAGAAAAAAAC
322 TTTATAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.30
26 9 0.39
27 7 0.30
ACGTcount: A:0.75, C:0.10, G:0.04, T:0.12
Consensus pattern (27 bp):
AAAACTTGAAAATAAAAGAAAAAAACA
Found at i:6023 original size:41 final size:42
Alignment explanation
Indices: 5977--6066 Score: 164
Period size: 42 Copynumber: 2.2 Consensus size: 42
5967 GTAAAACTCA
*
5977 AAAGGAA-TTTGTCATTTTTAACTCGATCTTCGCTTATAAAT
1 AAAGGAAGTTTGTCATTTTTAACTCGATCGTCGCTTATAAAT
6018 AAAGGAAGTTTGTCATTTTTAACTCGATCGTCGCTTATAAAT
1 AAAGGAAGTTTGTCATTTTTAACTCGATCGTCGCTTATAAAT
6060 AAAGGAA
1 AAAGGAA
6067 ATACATAATA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 7 0.15
42 40 0.85
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (42 bp):
AAAGGAAGTTTGTCATTTTTAACTCGATCGTCGCTTATAAAT
Found at i:10596 original size:13 final size:14
Alignment explanation
Indices: 10580--10614 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
10570 AAAATGAGCC
10580 TGTAATAATT-GTT
1 TGTAATAATTAGTT
10593 TGTAATAATTAGTT
1 TGTAATAATTAGTT
10607 T-TAATAAT
1 TGTAATAAT
10615 AATAATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (14 bp):
TGTAATAATTAGTT
Found at i:10614 original size:3 final size:3
Alignment explanation
Indices: 10608--10656 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
10598 TAATTAGTTT
*
10608 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10655 TA
1 TA
10657 GAAAAAATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:11395 original size:196 final size:198
Alignment explanation
Indices: 11046--11420 Score: 596
Period size: 196 Copynumber: 1.9 Consensus size: 198
11036 AGGTCTTATA
* * * * *
11046 AATGGCCCGGATGATTTAAACATCAAGAAACCCTTGAATATCAAGCTTAGTTTCTTGGTTGTCAA
1 AATGACCCGGAGGATTTAAACATCAAGAAACCCTTGAAAATCAAGCTTAGGTTCTTGGTTATCAA
* *
11111 GGAACCTCTTAAAAGGCTTATCTTCCTTTAACAGCTCTTTTCAGATAATTAAGAAACCCCTGAAA
66 GGAACCTCTTAAAAGGCTTAGCTTCCTTTAACAACTCTTTTCAGATAATTAAGAAACCCCTGAAA
11176 GGCTTAGTTCCAAAATATCATTTGAAAACATCCTACCCGGAGGTCTTATCATCTTGCTCAAAAGG
131 GGCTTAGTTCCAAAATATCATTTGAAAACATCCTACCCGGAGGTCTTATCATCTTGCTCAAAAGG
11241 CTT
196 CTT
11244 AATGACCCGGAGGATTTAAACATCAAGAAA-CCTTGAAAATCAAGCTTAGGTTCTTGGTTATCAA
1 AATGACCCGGAGGATTTAAACATCAAGAAACCCTTGAAAATCAAGCTTAGGTTCTTGGTTATCAA
* * * *
11308 TGAACC-CATTCAAAGGCTTAGCTTTCTTTAACAACTC-TTTGAGATAATTAAGAAACCCCTGAA
66 GGAACCTC-TTAAAAGGCTTAGCTTCCTTTAACAACTCTTTTCAGATAATTAAGAAACCCCTGAA
*
11371 AGGC-TAGTTTCCAAAATATCATTTGAAAACATCCTTCCCGGAGGTCTTAT
130 AGGCTTAG-TTCCAAAATATCATTTGAAAACATCCTACCCGGAGGTCTTAT
11421 GGATGGCTCG
Statistics
Matches: 163, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
195 3 0.02
196 71 0.44
197 61 0.37
198 28 0.17
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (198 bp):
AATGACCCGGAGGATTTAAACATCAAGAAACCCTTGAAAATCAAGCTTAGGTTCTTGGTTATCAA
GGAACCTCTTAAAAGGCTTAGCTTCCTTTAACAACTCTTTTCAGATAATTAAGAAACCCCTGAAA
GGCTTAGTTCCAAAATATCATTTGAAAACATCCTACCCGGAGGTCTTATCATCTTGCTCAAAAGG
CTT
Found at i:11589 original size:218 final size:218
Alignment explanation
Indices: 11211--11659 Score: 733
Period size: 219 Copynumber: 2.1 Consensus size: 218
11201 AAACATCCTA
*
11211 CCCGGAGGTCTTATCATCTTGCTCAAAAGGCTTAATGACCCGGAGGATTTAAACATCAAGAAACC
1 CCCGGAGGTCTTATCATCTTGCTCAAAAGGCTTAATGACCCAGAGGATTTAAACATCAAGAAACC
* *
11276 TTGAAAATCAAGCTTAGGTTCTTGGTTATCAATGAACCCATTCAAAGGCTTAGCTTTCTTTAACA
66 TTGAAAATCAAGCTTAGGTTCTTGGTTATCAAGGAACCCATTCAAAGGCTTAGCTTCCTTTAACA
11341 ACTCTTTGAGATAATTAAGAAACCCCTGAAAGGC-TAGTTTCCAAAATATCATTTG-AAAACATC
131 ACTCTTTGAGATAATTAAGAAACCCCTGAAAGGCTTAGTTTCCAAAATATCATTTGAAAAACATC
* *
11404 CTTCCCGGAGGTCTTATGGATGG
196 CTGCCCAGAGGTCTTATGGATGG
* **
11427 CTCGGAGGTCTTATCATCTTGCTCGGAAGGCTTACAGTTGACCCAGAGGATTTAAACATCAAGAA
1 CCCGGAGGTCTTATCATCTTGCTCAAAAGGCTTA-A--TGACCCAGAGGATTTAAACATCAAGAA
*
11492 ACCTTGAAAATCAAGCTTAGTTTCTTGGTTATCAAGGAA-CCATTCAAAGGCTTAGCTTCCTTTA
63 ACCTTGAAAATCAAGCTTAGGTTCTTGGTTATCAAGGAACCCATTCAAAGGCTTAGCTTCCTTTA
*
11556 ACAACTCTTTGAGATAATTAAGAAACCCCTGAAAGGCTTAGTTTCCAAAATCTCATTTGAAAAAC
128 ACAACTCTTTGAGATAATTAAGAAACCCCTGAAAGGCTTAGTTTCCAAAATATCATTTGAAAAAC
* *
11621 ATCCTGCCTAGAGGTCTTGTGGATGG
193 ATCCTGCCCAGAGGTCTTATGGATGG
*
11647 CCCGGAGGACTTA
1 CCCGGAGGTCTTA
11660 AAATTAAGGA
Statistics
Matches: 214, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
216 31 0.14
217 1 0.00
218 61 0.29
219 83 0.39
220 38 0.18
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (218 bp):
CCCGGAGGTCTTATCATCTTGCTCAAAAGGCTTAATGACCCAGAGGATTTAAACATCAAGAAACC
TTGAAAATCAAGCTTAGGTTCTTGGTTATCAAGGAACCCATTCAAAGGCTTAGCTTCCTTTAACA
ACTCTTTGAGATAATTAAGAAACCCCTGAAAGGCTTAGTTTCCAAAATATCATTTGAAAAACATC
CTGCCCAGAGGTCTTATGGATGG
Found at i:14054 original size:90 final size:90
Alignment explanation
Indices: 13908--14140 Score: 376
Period size: 90 Copynumber: 2.6 Consensus size: 90
13898 TATTTGAAAC
* * * *
13908 TTATCCATAAAGCTAGGGCTATTAACTAATTGCTTTAGAGGGATAACTCAAGCTTTATTGCATAT
1 TTATCCATAAAGCCAGGGCGATTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGCATAT
*
13973 AATAATATAATAGGCTAGTTGAATA
66 AATAATATAATAGGCTAGCTGAATA
* *
13998 TTATCCATAAAGCCGGGGCGATTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGCATAT
1 TTATCCATAAAGCCAGGGCGATTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGCATAT
*
14063 AATAGTATAATAGGCTAGCTGAATA
66 AATAATATAATAGGCTAGCTGAATA
* *
14088 TTATCCATAAAGCCAGGGTGATTAACCAATTGCTTTAGGGGGACAACTCAAGC
1 TTATCCATAAAGCCAGGGCGATTAACCAATTGCTTTAGAGGGACAACTCAAGC
14141 ATAACAGACT
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 131 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (90 bp):
TTATCCATAAAGCCAGGGCGATTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGCATAT
AATAATATAATAGGCTAGCTGAATA
Found at i:17919 original size:23 final size:22
Alignment explanation
Indices: 17839--17916 Score: 95
Period size: 23 Copynumber: 3.5 Consensus size: 22
17829 GAACCCCATA
* *
17839 GGGGTATCGATTCCCCTAC-AG
1 GGGGAATCGATTCCCCTTCAAG
17860 GGGGAATCGATTCCCCTTCAAAG
1 GGGGAATCGATTCCCCTTC-AAG
* *
17883 AGGGAATCGGTTCCCCTTCAAG
1 GGGGAATCGATTCCCCTTCAAG
*
17905 GGGGTATCGATT
1 GGGGAATCGATT
17917 TCCTCTGCAC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
21 17 0.35
22 12 0.25
23 19 0.40
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (22 bp):
GGGGAATCGATTCCCCTTCAAG
Found at i:31369 original size:36 final size:37
Alignment explanation
Indices: 31319--31395 Score: 138
Period size: 36 Copynumber: 2.1 Consensus size: 37
31309 TTATAGCAAA
*
31319 AAAAATCGTCTTTATTCGAATTTTGCC-AAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAAATAGC
31355 AAAAATCGTATTTATTCGAATTTTGCCAAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAAATAGC
31392 AAAA
1 AAAA
31396 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 26 0.67
37 13 0.33
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.31
Consensus pattern (37 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAAATAGC
Found at i:35889 original size:15 final size:15
Alignment explanation
Indices: 35871--35900 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
35861 CCACGGTGCT
35871 CCCGGAATCCTGCGC
1 CCCGGAATCCTGCGC
35886 CCCGGAATCCTGCGC
1 CCCGGAATCCTGCGC
35901 GATTGTGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.47, G:0.27, T:0.13
Consensus pattern (15 bp):
CCCGGAATCCTGCGC
Found at i:36372 original size:36 final size:37
Alignment explanation
Indices: 36322--36398 Score: 138
Period size: 36 Copynumber: 2.1 Consensus size: 37
36312 TTATAGCAAA
*
36322 AAAAATCGTCTTTATTCGAATTTTGCC-AAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAAATAGC
36358 AAAAATCGTATTTATTCGAATTTTGCCAAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAAATAGC
36395 AAAA
1 AAAA
36399 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 26 0.67
37 13 0.33
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.31
Consensus pattern (37 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAAATAGC
Found at i:39762 original size:29 final size:29
Alignment explanation
Indices: 39719--39801 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
39709 CTCACCTAAC
39719 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
39749 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
39778 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
39802 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:44532 original size:29 final size:29
Alignment explanation
Indices: 44489--44571 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
44479 CTCACCTAAC
44489 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
44519 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
44548 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
44572 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:47283 original size:30 final size:29
Alignment explanation
Indices: 47247--47374 Score: 82
Period size: 30 Copynumber: 4.3 Consensus size: 29
47237 GTCTTTCTTT
*
47247 ACAAATTCTACAGTAAACAATTCTACACTA
1 ACAAATTCTACA-TAAAAAATTCTACACTA
* * *
47277 ACAAATTTTGCATACAAAAAATTATACAC-A
1 ACAAATTCTACAT--AAAAAATTCTACACTA
* * **
47307 ACCAAATTATTCAGTAAACGATTC-AGCACTA
1 A-CAAATTCTACA-TAAAAAATTCTA-CACTA
* *
47338 ACAAATT-AAGCACAAAAAATTCTACACTA
1 ACAAATTCTA-CATAAAAAATTCTACACTA
47367 ACAAATTC
1 ACAAATTC
47375 CTCACTAAAA
Statistics
Matches: 75, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
29 21 0.28
30 30 0.40
31 23 0.31
32 1 0.01
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.25
Consensus pattern (29 bp):
ACAAATTCTACATAAAAAATTCTACACTA
Found at i:47343 original size:61 final size:59
Alignment explanation
Indices: 47247--47373 Score: 150
Period size: 61 Copynumber: 2.1 Consensus size: 59
47237 GTCTTTCTTT
* **
47247 ACAAATTCTACAGTAAACAATTCTACACTAACAAATTTTGCATACAAAAAATTATACAC-A
1 ACAAATTATACAGTAAACAATTCTACACTAACAAATTAAGC--ACAAAAAATTATACACTA
* * *
47307 ACCAAATTATTCAGTAAACGATTC-AGCACTAACAAATTAAGCACAAAAAATTCTACACTA
1 A-CAAATTATACAGTAAACAATTCTA-CACTAACAAATTAAGCACAAAAAATTATACACTA
47367 ACAAATT
1 ACAAATT
47374 CCTCACTAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
59 21 0.36
60 4 0.07
61 33 0.57
ACGTcount: A:0.50, C:0.20, G:0.05, T:0.25
Consensus pattern (59 bp):
ACAAATTATACAGTAAACAATTCTACACTAACAAATTAAGCACAAAAAATTATACACTA
Found at i:47374 original size:15 final size:16
Alignment explanation
Indices: 47327--47374 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
47317 TCAGTAAACG
47327 ATTC-AGCACTAACAA
1 ATTCAAGCACTAACAA
*
47342 ATT-AAGCAC-AAAAA
1 ATTCAAGCACTAACAA
*
47356 ATTCTA-CACTAACAA
1 ATTCAAGCACTAACAA
47371 ATTC
1 ATTC
47375 CTCACTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.50, C:0.23, G:0.04, T:0.23
Consensus pattern (16 bp):
ATTCAAGCACTAACAA
Found at i:49837 original size:14 final size:14
Alignment explanation
Indices: 49818--49844 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
49808 TTGCCTTTTA
49818 TTTTATTTTTGTTC
1 TTTTATTTTTGTTC
49832 TTTTATTTTTGTT
1 TTTTATTTTTGTT
49845 ATTTACATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.04, G:0.07, T:0.81
Consensus pattern (14 bp):
TTTTATTTTTGTTC
Found at i:54344 original size:5 final size:5
Alignment explanation
Indices: 54336--54397 Score: 70
Period size: 5 Copynumber: 11.6 Consensus size: 5
54326 AAAAAGAGTA
* *
54336 AAAAG AAAAG AGAAAT AGAATG AAAAG AAAAGAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG A-AAAG A-AAAG AAAAG -AAA-AG AAAAG AAAAG AAAAG
54385 AAAAG AAAAG AAA
1 AAAAG AAAAG AAA
54398 TAAATAATTA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
5 34 0.68
6 14 0.28
7 2 0.04
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:54361 original size:22 final size:22
Alignment explanation
Indices: 54336--54397 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
54326 AAAAAGAGTA
*
54336 AAAAGAAAAGAGAAATAG-AATG
1 AAAAGAAAAGAGAAA-AGAAAAG
54358 AAAAGAAAAGAGAAAAGAAAAG
1 AAAAGAAAAGAGAAAAGAAAAG
54380 AAAAG-AAA-AGAAAAGAAA
1 AAAAGAAAAGAGAAAAGAAA
54398 TAAATAATTA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
20 10 0.26
21 5 0.13
22 23 0.61
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (22 bp):
AAAAGAAAAGAGAAAAGAAAAG
Found at i:54366 original size:27 final size:26
Alignment explanation
Indices: 54336--54397 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 26
54326 AAAAAGAGTA
*
54336 AAAAGAAAAGAGAAATAG-AATGAAAAG
1 AAAAGAAAA-AGAAA-AGAAAAGAAAAG
54363 AAAAGAGAAAAGAAAAGAAAAGAAAAG
1 AAAAGA-AAAAGAAAAGAAAAGAAAAG
54390 AAAAGAAA
1 AAAAGAAA
54398 TAAATAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.12
27 25 0.78
28 3 0.09
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (26 bp):
AAAAGAAAAAGAAAAGAAAAGAAAAG
Found at i:55614 original size:116 final size:115
Alignment explanation
Indices: 55423--55875 Score: 490
Period size: 116 Copynumber: 3.9 Consensus size: 115
55413 TTTCCAGTGA
* ** * * *
55423 AAGGGTTTATAATGAGAAGAACTTGTCCGATGGGGAAGAAGAAGTTCCTAATGATAATAACTT-C
1 AAGGGTTCATAATGAGAAGAACTCATCCGATGGGGAGGAA-AAGTTCCTAATGAGAAGAACTTGC
* *
55487 TTCAACCGTGGCTCATCCATCACATAAGGAGTTGGATCAACATTTTCAATGG
65 -TCAACTGTGGCTCATCCATCACATAAGGAGTTGGATCAGCATTTTCAATGG
* * * *
55539 AAGGGTTCATAATGAGAAAAACTCATCCGAAGCGGGGGGAAAAGTTCCTAATAAGAAGAACTTGC
1 AAGGGTTCATAATGAGAAGAACTCATCCGATG-GGGAGGAAAAGTTCCTAATGAGAAGAACTTGC
55604 TCAACTGTGGCTTC-TCCATCACATAAGGAGTTGGATCAGCATTTT-AAGTGG
65 TCAACTGTGGC-TCATCCATCACATAAGGAGTTGGATCAGCATTTTCAA-TGG
* * * * *
55655 AAGGGTTCCTAATGAGAAGAACTCGTCTGATGAGGGAGAAAAAGTTCCTAATGAGAAGAACTTGT
1 AAGGGTTCATAATGAGAAGAACTCATCCGATG-GGGAGGAAAAGTTCCTAATGAGAAGAACTTGC
* * *
55720 TTAACCT-TGGCTCATCCATCACATAAGGAGTTGGATCAGTATTTCCAATGG
65 TCAA-CTGTGGCTCATCCATCACATAAGGAGTTGGATCAGCATTTTCAATGG
* * * *
55771 AAGGGTTCATAATGAGAAGAACTCATCTC-ATAAGGGA-GAAGAAGTTCTTAATTA-AAAAACTT
1 AAGGGTTCATAATGAGAAGAACTCATC-CGAT-GGGGAGGAA-AAGTTCCTAATGAGAAGAACTT
** * * * *
55833 ATTTAAC-CTAGCTCATCCATCACATAAGGAGCTGGATCAGCAT
63 GCTCAACTGTGGCTCATCCATCACATAAGGAGTTGGATCAGCAT
55876 CAATCTTTTC
Statistics
Matches: 289, Mismatches: 37, Indels: 24
0.83 0.11 0.07
Matches are distributed among these distances:
114 33 0.11
115 18 0.06
116 225 0.78
117 13 0.04
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (115 bp):
AAGGGTTCATAATGAGAAGAACTCATCCGATGGGGAGGAAAAGTTCCTAATGAGAAGAACTTGCT
CAACTGTGGCTCATCCATCACATAAGGAGTTGGATCAGCATTTTCAATGG
Found at i:60976 original size:25 final size:24
Alignment explanation
Indices: 60907--60976 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
60897 CACAGAAGTT
* * *
60907 CCACATAG-ATTTATCCCAAAGGA
1 CCACGTAGAATTTATCCCGAAGAA
* *
60930 CCGCGTAGAATTTGTCCCGAAGAA
1 CCACGTAGAATTTATCCCGAAGAA
*
60954 CCACGTAGAAATTTATCCTGAAG
1 CCACGTAG-AATTTATCCCGAAG
60977 GACTGTGTAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
23 6 0.16
24 19 0.51
25 12 0.32
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (24 bp):
CCACGTAGAATTTATCCCGAAGAA
Found at i:67921 original size:25 final size:24
Alignment explanation
Indices: 67832--67934 Score: 127
Period size: 24 Copynumber: 4.3 Consensus size: 24
67822 CACTGAAATG
67832 CCACATAG-ATTTGTCCCGAAGGA
1 CCACATAGAATTTGTCCCGAAGGA
* * *
67855 CCGCGTAGAATTTGTCTCGAAGGA
1 CCACATAGAATTTGTCCCGAAGGA
* * *
67879 CCGCGTAGAATTTGTCCCGAAGAA
1 CCACATAGAATTTGTCCCGAAGGA
*
67903 CCACATAGAAATTTGTCCCAAAGGA
1 CCACATAG-AATTTGTCCCGAAGGA
67928 CCACATA
1 CCACATA
67935 CAACCTTCGA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
23 6 0.09
24 42 0.61
25 21 0.30
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (24 bp):
CCACATAGAATTTGTCCCGAAGGA
Found at i:68086 original size:15 final size:15
Alignment explanation
Indices: 68068--68138 Score: 88
Period size: 15 Copynumber: 4.7 Consensus size: 15
68058 CACATAGGGT
*
68068 ATTTTCACGTAGAAC
1 ATTTTCACATAGAAC
*
68083 ATTTTCACTTAGAAC
1 ATTTTCACATAGAAC
*
68098 ATTTTCCCATAGAAC
1 ATTTTCACATAGAAC
* *
68113 ATTTTCATATAAAAC
1 ATTTTCACATAGAAC
*
68128 ATATTCACATA
1 ATTTTCACATA
68139 CCAATAAAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 48 1.00
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.37
Consensus pattern (15 bp):
ATTTTCACATAGAAC
Found at i:73275 original size:22 final size:22
Alignment explanation
Indices: 73250--73293 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
73240 TTTTAATTCC
73250 CTAATTT-CTAATATATTAACTT
1 CTAATTTACTAATATA-TAACTT
*
73272 CTAATTTACTAATTTATAACTT
1 CTAATTTACTAATATATAACTT
73294 GCTGACTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (22 bp):
CTAATTTACTAATATATAACTT
Found at i:73316 original size:15 final size:15
Alignment explanation
Indices: 73266--73316 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
73256 TCTAATATAT
*
73266 TAACTTCTAATTTAC
1 TAACTTCTAACTTAC
* * *
73281 TAATTTATAACTTGC
1 TAACTTCTAACTTAC
*
73296 TGACTTCTAACTTAC
1 TAACTTCTAACTTAC
73311 TAACTT
1 TAACTT
73317 TTTTTATTTT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.04, T:0.45
Consensus pattern (15 bp):
TAACTTCTAACTTAC
Found at i:78947 original size:19 final size:19
Alignment explanation
Indices: 78912--78948 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
78902 ATGACCAACA
*
78912 AAATCGCAATGCAATCTCT
1 AAATCGCAACGCAATCTCT
*
78931 AAATCGCAACGCGATCTC
1 AAATCGCAACGCAATCTC
78949 CAGTATCGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.30, G:0.14, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCAATCTCT
Found at i:78997 original size:20 final size:19
Alignment explanation
Indices: 78974--79120 Score: 123
Period size: 20 Copynumber: 7.3 Consensus size: 19
78964 GTTTCCAGAT
*
78974 TCGCAAGGCGATTTTGACTA
1 TCGCAATGCGATTTTGA-TA
* * *
78994 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGATTTTG-ATA
* *
79014 TCGCAACGCGATTCTGAATA
1 TCGCAATGCGATTTTG-ATA
79034 TCGCAATGCGATTTTGACTA
1 TCGCAATGCGATTTTGA-TA
* * *
79054 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGATTTTG-ATA
* *
79074 TCGCAACGCGATTCTGAATA
1 TCGCAATGCGATTTTG-ATA
79094 TCGCAATGCGATTTTGTATTA
1 TCGCAATGCGATTTTG-A-TA
79115 TCGCAA
1 TCGCAA
79121 CGCGGTCGCA
Statistics
Matches: 101, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
19 1 0.01
20 90 0.89
21 10 0.10
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (19 bp):
TCGCAATGCGATTTTGATA
Found at i:79018 original size:60 final size:60
Alignment explanation
Indices: 78974--79120 Score: 222
Period size: 60 Copynumber: 2.4 Consensus size: 60
78964 GTTTCCAGAT
* *
78974 TCGCAAGGCGATTTTGACTATCGCAATGCGAATATGTAAATCGCAACGCGATTCTGAATA
1 TCGCAAGGCGATTTTGACTATCGCAATGCGAATATGTAAATCGCAAAGCGATTCAGAATA
* * *
79034 TCGCAATGCGATTTTGACTATCGCAATGCGAATATGTAAATCGCAACGCGATTCTGAATA
1 TCGCAAGGCGATTTTGACTATCGCAATGCGAATATGTAAATCGCAAAGCGATTCAGAATA
* *
79094 TCGCAATGCGATTTTGTATTATCGCAA
1 TCGCAAGGCGATTTTG-ACTATCGCAA
79121 CGCGGTCGCA
Statistics
Matches: 84, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
60 75 0.89
61 9 0.11
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (60 bp):
TCGCAAGGCGATTTTGACTATCGCAATGCGAATATGTAAATCGCAAAGCGATTCAGAATA
Found at i:79057 original size:40 final size:40
Alignment explanation
Indices: 78974--79120 Score: 138
Period size: 40 Copynumber: 3.7 Consensus size: 40
78964 GTTTCCAGAT
* * * *
78974 TCGCAAGGCGATTTTG-ACTATCGCAATGCGAATATGTAAA
1 TCGCAATGCGATTTTGTAATATCGCAATGCGATTATG-ATA
* * *
79014 TCGCAACGCGATTCTG-AATATCGCAATGCGATTTTGACTA
1 TCGCAATGCGATTTTGTAATATCGCAATGCGATTATGA-TA
* * * *
79054 TCGCAATGCGAATATGTAA-ATCGCAACGCGATTCTGAATA
1 TCGCAATGCGATTTTGTAATATCGCAATGCGATTATG-ATA
*
79094 TCGCAATGCGATTTTGTATTATCGCAA
1 TCGCAATGCGATTTTGTAATATCGCAA
79121 CGCGGTCGCA
Statistics
Matches: 89, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 78 0.88
41 10 0.11
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (40 bp):
TCGCAATGCGATTTTGTAATATCGCAATGCGATTATGATA
Found at i:79353 original size:22 final size:22
Alignment explanation
Indices: 79323--79370 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
79313 CTACGGTGAC
* *
79323 ATCCGTCCCCATCTTCGACGAA
1 ATCCATCCCCATCTCCGACGAA
*
79345 ATCCATCCCCATCTCCGGCGAA
1 ATCCATCCCCATCTCCGACGAA
79367 ATCC
1 ATCC
79371 GTCTATCTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.23, C:0.44, G:0.12, T:0.21
Consensus pattern (22 bp):
ATCCATCCCCATCTCCGACGAA
Found at i:79809 original size:19 final size:19
Alignment explanation
Indices: 79769--79815 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 19
79759 GCGATTTTAG
79769 TTTCGTGTTGCGATAGTCATT
1 TTTCGTG-TGCGATAGTCA-T
*
79790 TTTCGTGTGCGAT-TTCAT
1 TTTCGTGTGCGATAGTCAT
79808 TTTCGTGT
1 TTTCGTGT
79816 TGCAATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 9 0.36
19 3 0.12
20 6 0.24
21 7 0.28
ACGTcount: A:0.11, C:0.15, G:0.23, T:0.51
Consensus pattern (19 bp):
TTTCGTGTGCGATAGTCAT
Found at i:79823 original size:19 final size:20
Alignment explanation
Indices: 79769--79823 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
79759 GCGATTTTAG
*
79769 TTTCGTGTTGCGATAGTCATT
1 TTTCGTGTTGCGAT-TTCATT
79790 TTTCGTG-TGCGATTTCA-T
1 TTTCGTGTTGCGATTTCATT
*
79808 TTTCGTGTTGCAATTT
1 TTTCGTGTTGCGATTT
79824 TAAGTTTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.26
19 10 0.32
20 6 0.19
21 7 0.23
ACGTcount: A:0.13, C:0.15, G:0.22, T:0.51
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTCATT
Found at i:81711 original size:20 final size:20
Alignment explanation
Indices: 81686--81732 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
81676 AACTTAAAAT
81686 GCAACGCGAAAATGACTATC
1 GCAACGCGAAAATGACTATC
**
81706 GCAACGCGAATTTGACTATC
1 GCAACGCGAAAATGACTATC
81726 GCAACGC
1 GCAACGC
81733 CTATCGCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (20 bp):
GCAACGCGAAAATGACTATC
Found at i:81833 original size:18 final size:18
Alignment explanation
Indices: 81806--81846 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
81796 TCGCAACACG
81806 GATTTAGTTTCGCGTTGC
1 GATTTAGTTTCGCGTTGC
* *
81824 GATTTGGTTTCGCGTTGT
1 GATTTAGTTTCGCGTTGC
81842 GATTT
1 GATTT
81847 TGTCGTTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.10, C:0.12, G:0.29, T:0.49
Consensus pattern (18 bp):
GATTTAGTTTCGCGTTGC
Found at i:81864 original size:18 final size:18
Alignment explanation
Indices: 81843--81891 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
81833 TCGCGTTGTG
81843 ATTTTGTCGTT-GATAGTC
1 ATTTTG-CGTTCGATAGTC
81861 ATTTCTGCGTTGCGATAGTC
1 ATTT-TGCGTT-CGATAGTC
81881 ATTTTCGCGTT
1 ATTTT-GCGTT
81892 GAGATTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 8 0.30
19 3 0.11
20 16 0.59
ACGTcount: A:0.14, C:0.16, G:0.22, T:0.47
Consensus pattern (18 bp):
ATTTTGCGTTCGATAGTC
Found at i:81906 original size:20 final size:20
Alignment explanation
Indices: 81883--81926 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
81873 CGATAGTCAT
81883 TTTCGCGTTGAGATTTTAAG
1 TTTCGCGTTGAGATTTTAAG
* *
81903 TTTCGTGTTGTGATTTTAAG
1 TTTCGCGTTGAGATTTTAAG
81923 TTTC
1 TTTC
81927 AGAAACAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.09, G:0.23, T:0.52
Consensus pattern (20 bp):
TTTCGCGTTGAGATTTTAAG
Found at i:82439 original size:18 final size:20
Alignment explanation
Indices: 82396--82439 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
82386 CTCACCTGTC
82396 ATCATTCAAGAGGCCTCTCCT
1 ATCATTCAAGAGGCCTCT-CT
82417 ATCATTCAAGAGGCC-CT-T
1 ATCATTCAAGAGGCCTCTCT
82435 ATCAT
1 ATCAT
82440 CCCTCAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.26
20 2 0.09
21 15 0.65
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (20 bp):
ATCATTCAAGAGGCCTCTCT
Found at i:82511 original size:43 final size:42
Alignment explanation
Indices: 82401--82513 Score: 104
Period size: 42 Copynumber: 2.7 Consensus size: 42
82391 CTGTCATCAT
* * *
82401 TCAAGAGGCCTCTCCTATCATTCAAGAGGCCCTTATCATCCC
1 TCAAGAGGTCTCTCCTACCATTCAAGAGGCCCTCATCATCCC
* * * **
82443 TCAAGA-GTCGCCTCCCACCGTTCAAGAGGCCC-CATGCCATCGT
1 TCAAGAGGTC-TCTCCTACCATTCAAGAGGCCCTCAT--CATCCC
*
82486 TGAAGAGGTCTCTCCTACCATTCAAGAG
1 TCAAGAGGTCTCTCCTACCATTCAAGAG
82514 CCGATTCACA
Statistics
Matches: 55, Mismatches: 12, Indels: 7
0.74 0.16 0.09
Matches are distributed among these distances:
41 4 0.07
42 24 0.44
43 24 0.44
44 3 0.05
ACGTcount: A:0.24, C:0.35, G:0.19, T:0.23
Consensus pattern (42 bp):
TCAAGAGGTCTCTCCTACCATTCAAGAGGCCCTCATCATCCC
Found at i:83868 original size:14 final size:14
Alignment explanation
Indices: 83849--83897 Score: 98
Period size: 14 Copynumber: 3.5 Consensus size: 14
83839 GCTTGTTTAA
83849 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
83863 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
83877 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
83891 TTGATTT
1 TTGATTT
83898 TTTTAATTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:84060 original size:19 final size:19
Alignment explanation
Indices: 84036--84095 Score: 93
Period size: 19 Copynumber: 3.1 Consensus size: 19
84026 GCTAAACTTA
84036 AAATCGCAATGCGAAAGTC
1 AAATCGCAATGCGAAAGTC
*
84055 AAATCGCAATGCGAAAGCC
1 AAATCGCAATGCGAAAGTC
*
84074 AAAATCGCAACGCGAAAGTC
1 -AAATCGCAATGCGAAAGTC
84094 AA
1 AA
84096 TTCGTGTTGC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.45, C:0.23, G:0.20, T:0.12
Consensus pattern (19 bp):
AAATCGCAATGCGAAAGTC
Found at i:84159 original size:20 final size:20
Alignment explanation
Indices: 84134--84230 Score: 140
Period size: 20 Copynumber: 4.8 Consensus size: 20
84124 GTGATTTTCT
*
84134 CGTTGCGATAGTCAAATTCC
1 CGTTGCGATAGTCAAATTCG
* *
84154 CGTTGCGATAATCAAATTCA
1 CGTTGCGATAGTCAAATTCG
*
84174 TGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
84194 TGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
84214 CGTTGCGATATTCAAAT
1 CGTTGCGATAGTCAAAT
84231 GAATGTAATA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 70 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:86441 original size:14 final size:14
Alignment explanation
Indices: 86422--86456 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
86412 TCCCGTGGCA
86422 TTTCTTCGGGGACT
1 TTTCTTCGGGGACT
*
86436 TTTCTTCGGGGATT
1 TTTCTTCGGGGACT
86450 TTTCTTC
1 TTTCTTC
86457 TTCTTTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.06, C:0.20, G:0.23, T:0.51
Consensus pattern (14 bp):
TTTCTTCGGGGACT
Found at i:86674 original size:24 final size:24
Alignment explanation
Indices: 86640--86693 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
86630 TCTGAACATC
86640 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
86664 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
86688 ATCAAA
1 ATCAAA
86694 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:86707 original size:24 final size:24
Alignment explanation
Indices: 86640--86707 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
86630 TCTGAACATC
* * *
86640 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
86664 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
86688 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
86708 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:87552 original size:20 final size:19
Alignment explanation
Indices: 87507--87566 Score: 63
Period size: 20 Copynumber: 3.3 Consensus size: 19
87497 CGCGTCCAAA
*
87507 TCGCGTTGCGA-TTACTAT
1 TCGCATTGCGATTTACTAT
*
87525 T-TCATTGCGATTTACATAT
1 TCGCATTGCGATTTAC-TAT
*
87544 TCGCATTGCGATTTTCTA-
1 TCGCATTGCGATTTACTAT
87562 TCGCA
1 TCGCA
87567 CGCAATTTGG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
17 7 0.20
18 10 0.29
19 6 0.17
20 12 0.34
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.42
Consensus pattern (19 bp):
TCGCATTGCGATTTACTAT
Done.