Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005095.1 Hibiscus syriacus cultivar Beakdansim tig00011458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 89905
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:9108 original size:60 final size:60
Alignment explanation
Indices: 9023--9162 Score: 174
Period size: 60 Copynumber: 2.3 Consensus size: 60
9013 TTTTTTTAAT
* *
9023 ATTCCAATTTTATCCCCAAAATATGACTCTCATTCTAAATTAAT-CCTTAAACTTTTGAAC
1 ATTCCAATTTTATCCCTAAAATATGACCCTCATTCTAAATTAATACC-TAAACTTTTGAAC
* * * * * * *
9083 ATTCTAATTTTATCCCTAAACTATGACCCTCTTTTTAAATTAGTACCTAAACTTTTGGAT
1 ATTCCAATTTTATCCCTAAAATATGACCCTCATTCTAAATTAATACCTAAACTTTTGAAC
*
9143 ATTCCAATTTCATCCCTAAA
1 ATTCCAATTTTATCCCTAAA
9163 TCCATCCAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
60 66 0.97
61 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.04, T:0.40
Consensus pattern (60 bp):
ATTCCAATTTTATCCCTAAAATATGACCCTCATTCTAAATTAATACCTAAACTTTTGAAC
Found at i:9374 original size:59 final size:61
Alignment explanation
Indices: 9300--9416 Score: 148
Period size: 60 Copynumber: 2.0 Consensus size: 61
9290 ATAAATTTGG
* * * *
9300 AATGTTAAGAAAGTTTAAGGGCTAATTTAGAATAAT-TTCATAGTTTTGGGATGAAATCAA
1 AATGTTAAGAAAGTTTAAGGACTAATTTAGAATAATAATCATAGTTTAGCGATGAAATCAA
* * * *
9360 AATGTTCA-AAAGTTTGATGACTAATTTAGAATCATAATCATAGTTTAGCGATGAAAT
1 AATGTTAAGAAAGTTTAAGGACTAATTTAGAATAATAATCATAGTTTAGCGATGAAAT
9417 TGAAACTTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
59 23 0.48
60 25 0.52
ACGTcount: A:0.40, C:0.07, G:0.18, T:0.35
Consensus pattern (61 bp):
AATGTTAAGAAAGTTTAAGGACTAATTTAGAATAATAATCATAGTTTAGCGATGAAATCAA
Found at i:15663 original size:21 final size:21
Alignment explanation
Indices: 15637--15711 Score: 132
Period size: 21 Copynumber: 3.6 Consensus size: 21
15627 GATTTACATA
15637 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
15658 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
15679 TTTGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
15700 TTCGCGTTGCGA
1 TTCGCATTGCGA
15712 ATCTGGAAAC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:16096 original size:24 final size:24
Alignment explanation
Indices: 16058--16109 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
16048 TTAGTATAAC
*
16058 TATAAAACTATTATTTA-TATATTT
1 TATAAAACTAATA-TTAGTATATTT
* *
16082 TATAAAATTAATATTAGTTTATTT
1 TATAAAACTAATATTAGTATATTT
16106 TATA
1 TATA
16110 CCTTTAGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 3 0.12
24 21 0.88
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
TATAAAACTAATATTAGTATATTT
Found at i:16492 original size:56 final size:57
Alignment explanation
Indices: 16364--16493 Score: 165
Period size: 56 Copynumber: 2.3 Consensus size: 57
16354 TCCTATTTTT
* * * *
16364 TAGATATATTCAA-TTTCGGAGTCTCTATTTTTATGCTTCTTAATGGCAACAACTAA
1 TAGATATATTCAATTTTGGGACTCTCTATTTTTATGCTTATTAATGACAACAACTAA
* * * *
16420 TACATATACTCGATTTTGGGACT-TCTATTTTTATGCTTATTAATGACAACAACTGA
1 TAGATATATTCAATTTTGGGACTCTCTATTTTTATGCTTATTAATGACAACAACTAA
*
16476 TAGATATATTTAATTTTG
1 TAGATATATTCAATTTTG
16494 ACACCTCTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
56 54 0.89
57 7 0.11
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (57 bp):
TAGATATATTCAATTTTGGGACTCTCTATTTTTATGCTTATTAATGACAACAACTAA
Found at i:16503 original size:56 final size:56
Alignment explanation
Indices: 16386--16508 Score: 147
Period size: 56 Copynumber: 2.2 Consensus size: 56
16376 ATTTCGGAGT
* * * **
16386 CTCTATTTTTATGCTTCTTAATGGCAACAACTAATACATATACTCGATTTTGGGAC
1 CTCTATTTTTATGCTTATTAATGACAACAACTAATACATATACTCAATTTTGACAC
* * * * *
16442 TTCTATTTTTATGCTTATTAATGACAACAACTGATAGATATATTTAATTTTGACAC
1 CTCTATTTTTATGCTTATTAATGACAACAACTAATACATATACTCAATTTTGACAC
16498 CTCTATCTTTT
1 CTCTAT-TTTT
16509 GGAGACCCTG
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
56 51 0.93
57 4 0.07
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.44
Consensus pattern (56 bp):
CTCTATTTTTATGCTTATTAATGACAACAACTAATACATATACTCAATTTTGACAC
Found at i:16751 original size:27 final size:28
Alignment explanation
Indices: 16710--16764 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
16700 GATATTGAAA
**
16710 TTAAATAAAATTAAATTTTAAGTATTAT
1 TTAAATAAAATTAAAAATTAAGTATTAT
16738 TTAAA-AAAATTAAAAATTAAGTATTAT
1 TTAAATAAAATTAAAAATTAAGTATTAT
16765 AACAAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (28 bp):
TTAAATAAAATTAAAAATTAAGTATTAT
Found at i:17636 original size:13 final size:13
Alignment explanation
Indices: 17597--17639 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
17587 ATAATTTAAC
17597 TTTCTTTTAATATT
1 TTTCTTTTAAT-TT
* *
17611 TTTATTGTAATTT
1 TTTCTTTTAATTT
*
17624 TTTCTTTTTATTT
1 TTTCTTTTAATTT
17637 TTT
1 TTT
17640 TAGTTTAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
13 15 0.62
14 9 0.38
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (13 bp):
TTTCTTTTAATTT
Found at i:17800 original size:56 final size:56
Alignment explanation
Indices: 17739--17913 Score: 235
Period size: 56 Copynumber: 3.1 Consensus size: 56
17729 AGGGCTCCCA
* * *
17739 AAAAATAGGGGTC-CCAAAATCGAGTATATCTATCATTTGTTGCCATTAATAAGCAT
1 AAAAATAGGGG-CACCAAAATCGAGTATATCTATCAATTGTTTCCATTAAGAAGCAT
* *
17795 AAAAATAGGGGCACCAAACTCGAGTATATCTATCAATTATTTCCATTAAGAAGCAT
1 AAAAATAGGGGCACCAAAATCGAGTATATCTATCAATTGTTTCCATTAAGAAGCAT
* * * * * *
17851 AAAAATAGAGGCTCCGAAATCGAGTATATGTATCAGTTGTTTCTATTAAGAAGCAT
1 AAAAATAGGGGCACCAAAATCGAGTATATCTATCAATTGTTTCCATTAAGAAGCAT
17907 AAAAATA
1 AAAAATA
17914 TGAGCCACGA
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
55 1 0.01
56 104 0.99
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.29
Consensus pattern (56 bp):
AAAAATAGGGGCACCAAAATCGAGTATATCTATCAATTGTTTCCATTAAGAAGCAT
Found at i:17925 original size:56 final size:55
Alignment explanation
Indices: 17755--17938 Score: 217
Period size: 56 Copynumber: 3.3 Consensus size: 55
17745 AGGGGTCCCA
* * * * * *
17755 AAATCGAGTATATCTATCATTTGTTGCCATTAATAAGCATAAAAATAGGGGCACC
1 AAATCGAGTATATCTATCAATTGTTTCCATTAAGAAGCATAAAAATAGAGCCACG
*
17810 AAACTCGAGTATATCTATCAATTATTTCCATTAAGAAGCATAAAAATAGAGGCTC-CG
1 AAA-TCGAGTATATCTATCAATTGTTTCCATTAAGAAGCATAAAAATAGA-GC-CACG
* * *
17867 AAATCGAGTATATGTATCAGTTGTTTCTATTAAGAAGCATAAAAATATGAGCCACG
1 AAATCGAGTATATCTATCAATTGTTTCCATTAAGAAGCATAAAAATA-GAGCCACG
* *
17923 AAATTGAATATATCTA
1 AAATCGAGTATATCTA
17939 GAAAATATGA
Statistics
Matches: 110, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
55 4 0.04
56 98 0.89
57 7 0.06
58 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (55 bp):
AAATCGAGTATATCTATCAATTGTTTCCATTAAGAAGCATAAAAATAGAGCCACG
Found at i:21193 original size:16 final size:16
Alignment explanation
Indices: 21172--21202 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
21162 TCTAGTTTTT
21172 CCGAGTACCCGGTTAC
1 CCGAGTACCCGGTTAC
21188 CCGAGTACCCGGTTA
1 CCGAGTACCCGGTTA
21203 GTTTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.35, G:0.26, T:0.19
Consensus pattern (16 bp):
CCGAGTACCCGGTTAC
Found at i:33158 original size:41 final size:40
Alignment explanation
Indices: 33125--33348 Score: 192
Period size: 41 Copynumber: 5.5 Consensus size: 40
33115 GTTTTTCAAC
* *
33125 AAACGCCGCAATAGGGTGGTAATTTAGCTGCGTTTTTATAT
1 AAACGCCGCAATAGAGTTGTAATTTAG-TGCGTTTTTATAT
* *
33166 AAACGCCGCAATAGAGTTGT--TTATAGTGACGTTTTATAAAAA
1 AAACGCCGCAATAGAGTTGTAATT-TAGTG-CGTTTT-T-ATAT
* * *
33208 AAACACCGCAATAGAGTAGTAATTTAGCGGCGTTTTTATAT
1 AAACGCCGCAATAGAGTTGTAATTTAG-TGCGTTTTTATAT
* *
33249 AAACGCCGCAATAGAGTTGT--TTATAGTGGCG-TTTTACAAG
1 AAACGCCGCAATAGAGTTGTAATT-TAGT-GCGTTTTTA-TAT
* *
33289 AAACGCCGCAA-ACGGGTCGTACA-TTAGTGGCGTTTTTATAT
1 AAACGCCGCAATA-GAGTTGTA-ATTTAGT-GCGTTTTTATAT
33330 AAACGCCGCAATAGAGTTG
1 AAACGCCGCAATAGAGTTG
33349 CTTATAGTGT
Statistics
Matches: 147, Mismatches: 20, Indels: 32
0.74 0.10 0.16
Matches are distributed among these distances:
39 12 0.08
40 32 0.22
41 63 0.43
42 28 0.19
43 9 0.06
44 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (40 bp):
AAACGCCGCAATAGAGTTGTAATTTAGTGCGTTTTTATAT
Found at i:33220 original size:42 final size:41
Alignment explanation
Indices: 33166--33380 Score: 181
Period size: 40 Copynumber: 5.3 Consensus size: 41
33156 GTTTTTATAT
*
33166 AAACGCCGCAATAGAGTTGTTTATAGTGACGTTTTATAAAAA
1 AAACGCCGCAATAGAGTTGTTTATAGTGGCGTTTTAT-AAAA
* * * * *
33208 AAACACCGCAATAGAGTAGTAATT-TAGCGGCGTTTT-TATAT
1 AAACGCCGCAATAGAGTTGT--TTATAGTGGCGTTTTATAAAA
* *
33249 AAACGCCGCAATAGAGTTGTTTATAGTGGCGTTTTA-CAAG
1 AAACGCCGCAATAGAGTTGTTTATAGTGGCGTTTTATAAAA
* * ** * *
33289 AAACGCCGCAA-ACGGGTCGTACATTAGTGGCGTTTT-TATAT
1 AAACGCCGCAATA-GAGTTGTTTA-TAGTGGCGTTTTATAAAA
* * * *
33330 AAACGCCGCAATAGAGTTGCTTATAGTGTCGTTTTA-CAAG
1 AAACGCCGCAATAGAGTTGTTTATAGTGGCGTTTTATAAAA
33370 AAACGCCGCAA
1 AAACGCCGCAA
33381 ATGGGTCGTA
Statistics
Matches: 136, Mismatches: 28, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
39 3 0.02
40 52 0.38
41 49 0.36
42 20 0.15
43 10 0.07
44 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.29
Consensus pattern (41 bp):
AAACGCCGCAATAGAGTTGTTTATAGTGGCGTTTTATAAAA
Found at i:33230 original size:83 final size:83
Alignment explanation
Indices: 33125--33365 Score: 330
Period size: 83 Copynumber: 2.9 Consensus size: 83
33115 GTTTTTCAAC
*
33125 AAACGCCGCAATAGGGTGGTAATTTAGCTGCGTTTTTATATAAACGCCGCAATAGAGTTGTTTAT
1 AAACGCCGCAATAGGGTAGTAATTTAGCTGCGTTTTTATATAAACGCCGCAATAGAGTTGTTTAT
33190 AGTGACGTTTTATAAAAA
66 AGTGACGTTTTATAAAAA
* * *
33208 AAACACCGCAATAGAGTAGTAATTTAGCGGCGTTTTTATATAAACGCCGCAATAGAGTTGTTTAT
1 AAACGCCGCAATAGGGTAGTAATTTAGCTGCGTTTTTATATAAACGCCGCAATAGAGTTGTTTAT
* * *
33273 AGTGGCG-TTT-TACAAG
66 AGTGACGTTTTATAAAAA
* *
33289 AAACGCCGCAA-ACGGGTCGTACA-TTAG-TGGCGTTTTTATATAAACGCCGCAATAGAGTTGCT
1 AAACGCCGCAATA-GGGTAGTA-ATTTAGCT-GCGTTTTTATATAAACGCCGCAATAGAGTTGTT
*
33351 TATAGTGTCGTTTTA
63 TATAGTGACGTTTTA
33366 CAAGAAACGC
Statistics
Matches: 140, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
80 1 0.01
81 65 0.46
82 7 0.05
83 67 0.48
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (83 bp):
AAACGCCGCAATAGGGTAGTAATTTAGCTGCGTTTTTATATAAACGCCGCAATAGAGTTGTTTAT
AGTGACGTTTTATAAAAA
Found at i:33348 original size:81 final size:81
Alignment explanation
Indices: 33112--33422 Score: 389
Period size: 81 Copynumber: 3.8 Consensus size: 81
33102 AAACTTTAGC
* * *
33112 GGCGTTTTTCAACAAACGCCGCAATAGGGTGGTAATTTAGCT-GCGTTTTTATATAAACGCCGCA
1 GGCGTTTTACAAGAAACGCCGCAATAGGGTCGTAATTTAG-TGGCGTTTTTATATAAACGCCGCA
33176 ATAGAGTTGTTTATAGT
65 ATAGAGTTGTTTATAGT
* * * * * * *
33193 GACGTTTTATAAAAAAAACACCGCAATAGAGTAGTAATTTAGCGGCGTTTTTATATAAACGCCGC
1 GGCG-TTT-TACAAGAAACGCCGCAATAGGGTCGTAATTTAGTGGCGTTTTTATATAAACGCCGC
33258 AATAGAGTTGTTTATAGT
64 AATAGAGTTGTTTATAGT
33276 GGCGTTTTACAAGAAACGCCGCAA-ACGGGTCGTACA-TTAGTGGCGTTTTTATATAAACGCCGC
1 GGCGTTTTACAAGAAACGCCGCAATA-GGGTCGTA-ATTTAGTGGCGTTTTTATATAAACGCCGC
*
33339 AATAGAGTTGCTTATAGT
64 AATAGAGTTGTTTATAGT
* * * *
33357 GTCGTTTTACAAGAAACGCCGCAA-ATGGGTCGTACA-TTAGTGGCGTTTTTCTGTAAACGTCGC
1 GGCGTTTTACAAGAAACGCCGCAATA-GGGTCGTA-ATTTAGTGGCGTTTTTATATAAACGCCGC
33420 AAT
64 AAT
33423 TGATTTTAAC
Statistics
Matches: 204, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
80 1 0.00
81 127 0.62
82 7 0.03
83 69 0.34
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (81 bp):
GGCGTTTTACAAGAAACGCCGCAATAGGGTCGTAATTTAGTGGCGTTTTTATATAAACGCCGCAA
TAGAGTTGTTTATAGT
Found at i:33374 original size:40 final size:39
Alignment explanation
Indices: 33112--33380 Score: 186
Period size: 41 Copynumber: 6.6 Consensus size: 39
33102 AAACTTTAGC
* * * * *
33112 GGCGTTTTTCAACAAACGCCGCAATAGGGTGGTAATTTAGCT
1 GGCGTTTTTAAAGAAACGCCGCAATAGAGTTGT--TATAG-T
* *
33154 -GCGTTTTTATATAAACGCCGCAATAGAGTTGTTTATAGT
1 GGCGTTTTTAAAGAAACGCCGCAATAGAGTTG-TTATAGT
* * * * * *
33193 GACGTTTTATAAAAAAAACACCGCAATAGAGTAGTAATTTAGC
1 GGCGTTTT-T-AAAGAAACGCCGCAATAGAGTTGT--TATAGT
* *
33236 GGCGTTTTTATATAAACGCCGCAATAGAGTTGTTTATAGT
1 GGCGTTTTTAAAGAAACGCCGCAATAGAGTTG-TTATAGT
* * *
33276 GGCG-TTTTACAAGAAACGCCGCAA-ACGGGTCGTACATTAGT
1 GGCGTTTTTA-AAGAAACGCCGCAATA-GAGTTGT-TA-TAGT
* *
33317 GGCGTTTTTATATAAACGCCGCAATAGAGTTGCTTATAGT
1 GGCGTTTTTAAAGAAACGCCGCAATAGAGTTG-TTATAGT
*
33357 GTCG-TTTTACAAGAAACGCCGCAA
1 GGCGTTTTTA-AAGAAACGCCGCAA
33381 ATGGGTCGTA
Statistics
Matches: 179, Mismatches: 33, Indels: 32
0.73 0.14 0.13
Matches are distributed among these distances:
39 13 0.07
40 54 0.30
41 72 0.40
42 29 0.16
43 11 0.06
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (39 bp):
GGCGTTTTTAAAGAAACGCCGCAATAGAGTTGTTATAGT
Found at i:33421 original size:41 final size:41
Alignment explanation
Indices: 33272--33405 Score: 150
Period size: 41 Copynumber: 3.3 Consensus size: 41
33262 GAGTTGTTTA
*
33272 TAGTGGCGTTTTACAAGAAACGCCGCAAACGGGTCGTACAT
1 TAGTGGCGTTTTACAAGAAACGCCGCAAATGGGTCGTACAT
* * * * *
33313 TAGTGGCGTTTTTA-TATAAACGCCGC-AATAGAGT--TGCTT
1 TAGTGGCG-TTTTACAAGAAACGCCGCAAAT-GGGTCGTACAT
*
33352 ATAGTGTCGTTTTACAAGAAACGCCGCAAATGGGTCGTACAT
1 -TAGTGGCGTTTTACAAGAAACGCCGCAAATGGGTCGTACAT
33394 TAGTGGCGTTTT
1 TAGTGGCGTTTT
33406 TCTGTAAACG
Statistics
Matches: 73, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
39 8 0.11
40 22 0.30
41 35 0.48
42 8 0.11
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (41 bp):
TAGTGGCGTTTTACAAGAAACGCCGCAAATGGGTCGTACAT
Found at i:35091 original size:43 final size:43
Alignment explanation
Indices: 34943--35157 Score: 204
Period size: 43 Copynumber: 5.0 Consensus size: 43
34933 TATTTGTAGG
* * **
34943 AAAACACCGCTAAATATCAACATCT-TCTGCGGCGTTTGTAGGA
1 AAAACGCCGCTAAATATCAACACCTAT-TGCGGCGTTTGTCTGA
* * * * *
34986 AAAACGCCGGTAAAAATAAACATCTACTGCGGCGTTTG--TGAA
1 AAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTG-A
* * *
35028 GAAAACGCCGCTAAACATCAACGCCTATTGCGGCGTTTGTCTGC
1 -AAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGA
* * * *
35072 CAAATGCCGTTAAATATCAACACCTATTGCGGCGTTTTTCTGA
1 AAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGA
* * *
35115 AAAACGCCACTAAATATCAATACCTTTTGCGGCGTTTGT-TGA
1 AAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGA
35157 A
1 A
35158 CGACGCTATA
Statistics
Matches: 140, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 5 0.04
43 132 0.94
45 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (43 bp):
AAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTCTGA
Found at i:40890 original size:31 final size:31
Alignment explanation
Indices: 40852--40920 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
40842 CTTTTAAAAC
40852 TTGCAATACAG-TCCCCCAACATTTAGTCTGT
1 TTGCAATA-AGATCCCCCAACATTTAGTCTGT
* * *
40883 TTGCAATATGATCCCTCAATATTTAGTCTGT
1 TTGCAATAAGATCCCCCAACATTTAGTCTGT
40914 TTGCAAT
1 TTGCAAT
40921 GTGGTCCCCG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 1 0.03
31 33 0.97
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (31 bp):
TTGCAATAAGATCCCCCAACATTTAGTCTGT
Found at i:43826 original size:33 final size:33
Alignment explanation
Indices: 43779--43879 Score: 166
Period size: 33 Copynumber: 3.1 Consensus size: 33
43769 ACCTAGTGTA
** *
43779 TATGGTGGGTACGACCTTATGTGACATACTGAT
1 TATGGTGGACACGACCTTATGTGTCATACTGAT
43812 TATGGTGGACACGACCTTATGTGTCATACTGAT
1 TATGGTGGACACGACCTTATGTGTCATACTGAT
*
43845 TATGGTGGACACGACCTTATGTGTCATACAGAT
1 TATGGTGGACACGACCTTATGTGTCATACTGAT
43878 TA
1 TA
43880 GCACTACGGT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (33 bp):
TATGGTGGACACGACCTTATGTGTCATACTGAT
Found at i:44007 original size:44 final size:44
Alignment explanation
Indices: 43958--44095 Score: 242
Period size: 44 Copynumber: 3.1 Consensus size: 44
43948 TGGTATATGG
* *
43958 TTATGGA-ATAATGGCAAGTGTATTGGTAAAATAAGCTTACGAGC
1 TTATGGATA-AATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
44002 TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
1 TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
44046 TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
1 TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
44090 TTATGG
1 TTATGG
44096 TATTAAATAG
Statistics
Matches: 91, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
44 90 0.99
45 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (44 bp):
TTATGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
Found at i:44056 original size:25 final size:25
Alignment explanation
Indices: 43984--44056 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 25
43974 AGTGTATTGG
43984 TAAAATAAGCTTACGAGCTTATGGA
1 TAAAATAAGCTTACGAGCTTATGGA
* **
44009 T-AAAT--G-GTA--AGTATATTGG-
1 TAAAATAAGCTTACGAGCTTA-TGGA
44028 TAAAATAAGCTTACGAGCTTATGGA
1 TAAAATAAGCTTACGAGCTTATGGA
44053 TAAA
1 TAAA
44057 TGGTAAGTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 16
0.61 0.11 0.29
Matches are distributed among these distances:
19 5 0.15
20 7 0.21
21 2 0.06
22 2 0.06
23 2 0.06
24 7 0.21
25 9 0.26
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (25 bp):
TAAAATAAGCTTACGAGCTTATGGA
Found at i:44057 original size:24 final size:24
Alignment explanation
Indices: 43986--44057 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
43976 TGTATTGGTA
43986 AAATAAGCTTACGAGCTTATGGAT
1 AAATAAGCTTACGAGCTTATGGAT
*
44010 AAAT--G-GTA--AG-TATATTGG-T
1 AAATAAGCTTACGAGCT-TA-TGGAT
44029 AAAATAAGCTTACGAGCTTATGGAT
1 -AAATAAGCTTACGAGCTTATGGAT
44054 AAAT
1 AAAT
44058 GGTAAGTATA
Statistics
Matches: 36, Mismatches: 2, Indels: 20
0.62 0.03 0.34
Matches are distributed among these distances:
18 1 0.03
19 5 0.14
20 7 0.19
21 2 0.06
22 2 0.06
23 2 0.06
24 11 0.31
25 5 0.14
26 1 0.03
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (24 bp):
AAATAAGCTTACGAGCTTATGGAT
Found at i:45512 original size:31 final size:31
Alignment explanation
Indices: 45477--45553 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
45467 GGTTATGTCA
*
45477 GGGACTATATTGCAAACAGACTAAATGTTGG
1 GGGACTATATTGCAAACAGACTAAATGTTAG
* *
45508 GGGACCATATTACAAACAGACTAAATGTTAG
1 GGGACTATATTGCAAACAGACTAAATGTTAG
*
45539 GGGACTGTATTGCAA
1 GGGACTATATTGCAA
45554 GTTTTAAAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (31 bp):
GGGACTATATTGCAAACAGACTAAATGTTAG
Found at i:46066 original size:2 final size:2
Alignment explanation
Indices: 46059--46097 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
46049 CCAAAACCCA
* * *
46059 TC TC TC TC TC TC TC TC TG TC TC TG TC TC TC TT TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
46098 ATATTATATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.41, G:0.05, T:0.54
Consensus pattern (2 bp):
TC
Found at i:46846 original size:3 final size:3
Alignment explanation
Indices: 46838--46876 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
46828 CTTATAAGAT
46838 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
46877 TCAATCAAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:51440 original size:3 final size:3
Alignment explanation
Indices: 51432--51504 Score: 146
Period size: 3 Copynumber: 24.3 Consensus size: 3
51422 ACTATTTTCC
51432 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
51480 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
51505 CTCTGATTTT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:52152 original size:20 final size:20
Alignment explanation
Indices: 52114--52152 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
52104 CCAATATATT
* *
52114 TTTACCGGTTATATTATAAA
1 TTTACCGGTTACATAATAAA
*
52134 TTTACCTGTTACATAATAA
1 TTTACCGGTTACATAATAA
52153 TTATCGATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.44
Consensus pattern (20 bp):
TTTACCGGTTACATAATAAA
Found at i:52918 original size:181 final size:182
Alignment explanation
Indices: 52523--52977 Score: 723
Period size: 181 Copynumber: 2.5 Consensus size: 182
52513 ACTTCTTTAC
* *
52523 TACCGGTTTTGTCATTTCGAGATCGATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGA
1 TACCGGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
* * *
52588 TACATTTTTATAAAGTATCGATACTTTATTGGCGCTATAACTTATTTTCTTTTAAATTCCAAAAG
66 TACATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTATTCTCTTTTAAATTCCAAAAG
* ** *
52653 TGTCGATACTTATAATAAAGTATCGACACTTTCAACATATTTGGTAGCTCTT
131 TGTCGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAGCGCTT
52705 TACCGGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
1 TACCGGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
* * *
52770 TATATTTTTATAAAGTATCGACATTTTATTAGCGCTATAACTTCTTCTC-TTTAAATTCCAAAAG
66 TACATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTATTCTCTTTTAAATTCCAAAAG
*
52834 TGTCGATACTTATAATAAAGTATTGACACTATCAACATATCCGGTAGCGCTT
131 TGTCGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAGCGCTT
** ** * * *
52886 TACTTGTTTTGTCATTTATAGACCGATTTTGTCATTTTTTTACCTGTTATATTATTATAGATCGA
1 TACCGGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
52951 TACATTTTTATAAAGTATCGACACTTT
66 TACATTTTTATAAAGTATCGACACTTT
52978 CAATATATCC
Statistics
Matches: 251, Mismatches: 22, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
181 145 0.58
182 106 0.42
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (182 bp):
TACCGGTTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
TACATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTATTCTCTTTTAAATTCCAAAAG
TGTCGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAGCGCTT
Found at i:53048 original size:112 final size:112
Alignment explanation
Indices: 52848--53422 Score: 866
Period size: 112 Copynumber: 5.1 Consensus size: 112
52838 GATACTTATA
* * * *
52848 ATAAAGTATTGACACTATCAACATATCCGGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGAT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGT
*
52913 TTTGTCATTTTTTTACCTGTTATATTATTATAGATCGATACATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
* **
52960 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGAGTGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGT
*
53025 TTTGTCATTTTTTTACCTATTATATTGTTAT-GAATCGATACATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATAG-ATCGATACATTTTT
*
53072 ATAAAGTATCGACACTTTCAATATATCCGGTAGCACTTTACTTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGT
*
53137 TTTGTCATTTTTTTACCTTTTATATTGTTATAGATCGATACATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
* * *
53184 ATAAAGTATGGACACTTTCAATATATCCGGTAGCGCTTTACTTGTTTTGTCATTTTTAAACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGT
* * * * *
53249 TTTGTC-TTATTTTTATCTGTTATATTGTTATGGATCAACATATTTTT
66 TTTGTCATT-TTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
* * * * *
53296 ATAAAGTATTGATACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTATCATTTATAGATCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGT
* ** *
53361 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATTAATATATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
53408 ATAAAGTATCGACAC
1 ATAAAGTATCGACAC
53423 AAACCGACAA
Statistics
Matches: 423, Mismatches: 36, Indels: 8
0.91 0.08 0.02
Matches are distributed among these distances:
111 3 0.01
112 417 0.99
113 3 0.01
ACGTcount: A:0.26, C:0.14, G:0.13, T:0.47
Consensus pattern (112 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTTACCTGTTATATTGTTATAGATCGATACATTTTT
Found at i:54067 original size:9 final size:8
Alignment explanation
Indices: 54047--54106 Score: 54
Period size: 9 Copynumber: 7.5 Consensus size: 8
54037 ATAATAAACA
54047 AAAATAAT
1 AAAATAAT
54055 AAAATAAT
1 AAAATAAT
54063 GAAAAT-A-
1 -AAAATAAT
*
54070 AAAATAAA
1 AAAATAAT
*
54078 AATAAAAAT
1 AA-AATAAT
54087 AAAATGAAT
1 AAAAT-AAT
54096 AAAATAA-
1 AAAATAAT
54103 AAAA
1 AAAA
54107 GTAAAAGGGT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
6 5 0.11
7 5 0.11
8 15 0.34
9 19 0.43
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.18
Consensus pattern (8 bp):
AAAATAAT
Found at i:54091 original size:32 final size:33
Alignment explanation
Indices: 54039--54105 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 33
54029 GAAAAAAGAT
54039 AATAAACAAAAATAATAAAAT-AATGAAAATAAA
1 AATAAACAAAAATAATAAAATGAAT-AAAATAAA
54072 AATAAA-AATAAA-AATAAAATGAATAAAATAAA
1 AATAAACAA-AAATAATAAAATGAATAAAATAAA
54104 AA
1 AA
54106 AGTAAAAGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
32 20 0.62
33 12 0.38
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.18
Consensus pattern (33 bp):
AATAAACAAAAATAATAAAATGAATAAAATAAA
Found at i:54105 original size:6 final size:6
Alignment explanation
Indices: 54032--54090 Score: 57
Period size: 6 Copynumber: 9.7 Consensus size: 6
54022 AGTTAGTGAA
* * * *
54032 AAAAGAT AATAAAC AAAAAT AATAA- AATAAT GAAAAT AAAAAT AAAAAT
1 AAAA-AT AA-AAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
54081 AAAAAT AAAA
1 AAAAAT AAAA
54091 TGAATAAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
5 5 0.11
6 32 0.73
7 5 0.11
8 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:54151 original size:9 final size:10
Alignment explanation
Indices: 54128--54154 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
54118 AGTTTTTTAA
54128 AAAAAATAAT
1 AAAAAATAAT
54138 AAAAAATAAT
1 AAAAAATAAT
54148 AAAAAAT
1 AAAAAAT
54155 TATTTAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (10 bp):
AAAAAATAAT
Found at i:54571 original size:2 final size:2
Alignment explanation
Indices: 54564--54610 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
54554 CATGCATGTA
54564 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
54606 A- AT AT
1 AT AT AT
54611 CTCTTGGGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:56130 original size:165 final size:163
Alignment explanation
Indices: 55839--56368 Score: 652
Period size: 165 Copynumber: 3.2 Consensus size: 163
55829 TTTGCCTCTG
* *
55839 AGCTGAGTGTAATCGAACTCGAAGGTCTTCTGTTGGCAGATAGCCCTTTTCGACTTAAGCTATGC
1 AGCTGAGTGTAATCGAACTCG--GG--GTCT-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGC
* * * *
55904 TGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGT-ATTTGGTTGGCAGATAAAC
61 TGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGG-TGACAGATAACC
* *
55968 CTTCTCGACTTAAGTTATGTTGCAAATGATGTGCCCTCAA
125 CTTCTAGACTTAAGTTATGCTG-AAATGATGTGCCCTCAA
* *
56008 AGCTGAGTGTAATCGAACTCGGGAGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGATGCA
1 AGCTGAGTGTAATCGAACTCGGG-GTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
* * *
56073 AATGATGTGCCGTT-AAGCTGAGTGTAGTCGAACTCAAAGGTCTTTTGGTGACAGATAACCCTTC
65 AATGATGTGCC-TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTC
* * *
56137 TAGACTTAAGTTTTGCTGATAATGATATGCCCTCGA
129 TAGACTTAAGTTATGCTGA-AATGATGTGCCCTCAA
* * *
56173 AGCTTAGTGTAATCGAACTCAGGGGTCTTTGGCAGATAGCCCTTCTCAACTTAAGCTATGCTACA
1 AGCTGAGTGTAATCGAACTC-GGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCA
* * *
56238 AATGATGAGCCTTGGAGCTGAACGTAGTCGAACTCGAAGGTCTTTTGGTGATAGATAACCCTTCT
65 AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCT
* * ***
56303 AGCCTTGAGTTATGCTGTAAATGATGTG-CCTTGG
130 AGACTTAAGTTATGCTG-AAATGATGTGCCCTCAA
* * *
56337 AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG
1 AGCTGAGTGTAATCGAACTCG-GGGTCTTTGG
56369 TTGGCACGAT
Statistics
Matches: 316, Mismatches: 38, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
163 1 0.00
164 33 0.10
165 245 0.78
166 14 0.04
167 2 0.01
169 21 0.07
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (163 bp):
AGCTGAGTGTAATCGAACTCGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAA
ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTA
GACTTAAGTTATGCTGAAATGATGTGCCCTCAA
Found at i:56385 original size:84 final size:84
Alignment explanation
Indices: 55838--56374 Score: 503
Period size: 84 Copynumber: 6.5 Consensus size: 84
55828 GTTTGCCTCT
* * * *
55838 GAGCTGAGTGTAATCGAACTCGAAGGTCTTCT-GTTGGCAGATAGCCCTTTTCGACTTAAGCTAT
1 GAGCTGAGTGTAGTCGAACTCGAAGGTCTT-TGGTTGGCAGATAACCCTTCTAGACTTAAGCTAT
55902 GCTGCAAATGATGTGCCTTG
65 GCTGCAAATGATGTGCCTTG
* * * * * *
55922 GAGCTGAGCGTAGTCAAACTCGAAGGTATTTGGTTGGCAGATAAACCTTCTCGACTTAAGTTATG
1 GAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGCTATG
* **
55987 TTGCAAATGATGTGCCCTCA
66 CTGCAAATGATGTG-CCTTG
* * * *
56007 AAGCTGAGTGTAATCGAACTCG-GGAGTC--T--TTGGCAGATAACCCTTCTCGACTTAAGCTAT
1 GAGCTGAGTGTAGTCGAACTCGAAG-GTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGCTAT
*
56067 GATGCAAATGATGTGCCGTT-
65 GCTGCAAATGATGTGCC-TTG
* * * * *
56087 AAGCTGAGTGTAGTCGAACTCAAAGGTCTTTTGG-TGACAGATAACCCTTCTAGACTTAAGTTTT
1 GAGCTGAGTGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTAGACTTAAGCTAT
* *
56151 GCTG-ATAATGATATGCCCTCG
65 GCTGCA-AATGATGTG-CCTTG
* * * * *
56172 AAGCTTAGTGTAATCGAACTC-AGGGGTC--T--TTGGCAGATAGCCCTTCTCA-ACTTAAGCTA
1 GAGCTGAGTGTAGTCGAACTCGA-AGGTCTTTGGTTGGCAGATAACCCTTCT-AGACTTAAGCTA
* *
56231 TGCTACAAATGATGAGCCTTG
64 TGCTGCAAATGATGTGCCTTG
** ** * * *
56252 GAGCTGAACGTAGTCGAACTCGAAGGTCTTTTGG-TGATAGATAACCCTTCTAGCCTTGAGTTAT
1 GAGCTGAGTGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTAGACTTAAGCTAT
*
56316 GCTGTAAATGATGTGCCTTG
65 GCTGCAAATGATGTGCCTTG
*
56336 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCA
1 GAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTTGGCA
56375 CGATTCCCTT
Statistics
Matches: 368, Mismatches: 60, Indels: 50
0.77 0.13 0.10
Matches are distributed among these distances:
80 49 0.13
81 80 0.22
82 3 0.01
83 11 0.03
84 177 0.48
85 48 0.13
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (84 bp):
GAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGACTTAAGCTATG
CTGCAAATGATGTGCCTTG
Found at i:56675 original size:106 final size:106
Alignment explanation
Indices: 56490--57552 Score: 1759
Period size: 106 Copynumber: 10.0 Consensus size: 106
56480 TATTGTTTCA
* ** * * * * *
56490 AGTCCAATATCCTCCGCCGTGAAGCTGAAATTGGCTCTGGAACTGGGAAATTATTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
* *
56555 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
56596 AGTCCAATATCATTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGGGAAATTGTTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
*
56661 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
56702 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
* *
56767 CAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTCG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
56808 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
* *
56873 CAGCGGTCCCTTCCTTGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
56914 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
56979 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
57020 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
* *
57085 CAGCGGTCCCTTTGTCGTGAAGTTGAACTTACGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
57126 AGTCCAATATCCTTCGTTATGAAGTTGAAATTGGCTCTGAAA-TGGAGAAGTTGTTTGTTGACAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGG-GAAGTTGTTTATTGACAA
* *
57190 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
57232 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
*
57297 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
57338 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
57403 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
57444 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
* *
57509 CAGCGGTACCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
57550 AGT
1 AGT
57553 AGCACGATAT
Statistics
Matches: 901, Mismatches: 54, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
105 2 0.00
106 896 0.99
107 3 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:58091 original size:18 final size:18
Alignment explanation
Indices: 58065--58099 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
58055 GTTGAATCTT
* *
58065 CAAAGATGCCTCAATATC
1 CAAAAATGCCCCAATATC
58083 CAAAAATGCCCCAATAT
1 CAAAAATGCCCCAATAT
58100 TTGATGTTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.29, G:0.09, T:0.20
Consensus pattern (18 bp):
CAAAAATGCCCCAATATC
Found at i:59181 original size:20 final size:20
Alignment explanation
Indices: 59154--59202 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
59144 TTTTTGTCCC
59154 TTTTTCTTTTTGAT-TTTTG
1 TTTTTCTTTTTGATCTTTTG
*
59173 TTCTTTCTTTTTGTTCTTTTG
1 TT-TTTCTTTTTGATCTTTTG
59194 TTTTTCTTT
1 TTTTTCTTT
59203 GTTTTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 2 0.07
20 18 0.67
21 7 0.26
ACGTcount: A:0.02, C:0.10, G:0.08, T:0.80
Consensus pattern (20 bp):
TTTTTCTTTTTGATCTTTTG
Found at i:59211 original size:13 final size:13
Alignment explanation
Indices: 59162--59208 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
59152 CCTTTTTCTT
59162 TTTGATTTTTGTTC
1 TTTG-TTTTTGTTC
*
59176 TTTCTTTTTGTTC
1 TTTGTTTTTGTTC
*
59189 TTT-TGTTT-TTC
1 TTTGTTTTTGTTC
59200 TTTGTTTTT
1 TTTGTTTTT
59209 TTTTTGCTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 6 0.21
12 8 0.28
13 12 0.41
14 3 0.10
ACGTcount: A:0.02, C:0.09, G:0.11, T:0.79
Consensus pattern (13 bp):
TTTGTTTTTGTTC
Found at i:59212 original size:20 final size:19
Alignment explanation
Indices: 59154--59212 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
59144 TTTTTGTCCC
**
59154 TTTTTCTTTTTGATTTTTG
1 TTTTTCTTTTTTTTTTTTG
*
59173 TTCTTTCTTTTTGTTCTTTTG
1 TT-TTTCTTTTT-TTTTTTTG
59194 TTTTTCTTTGTTTTTTTTT
1 TTTTTCTTT-TTTTTTTTT
59213 TGCTTCTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
19 2 0.06
20 22 0.67
21 9 0.27
ACGTcount: A:0.02, C:0.08, G:0.08, T:0.81
Consensus pattern (19 bp):
TTTTTCTTTTTTTTTTTTG
Found at i:59222 original size:15 final size:14
Alignment explanation
Indices: 59157--59235 Score: 72
Period size: 15 Copynumber: 5.4 Consensus size: 14
59147 TTGTCCCTTT
59157 TTCTTTTTGATTTTTG
1 TTCTTTTT--TTTTTG
*
59173 TTC-TTTCTTTTTG
1 TTCTTTTTTTTTTG
59186 TTCTTTTGTTTTTCT-
1 TTCTTTT-TTTTT-TG
*
59201 TTGTTTTTTTTTTG
1 TTCTTTTTTTTTTG
59215 CTTCTTTTCTTTTTTG
1 -TTCTTTT-TTTTTTG
59231 TTCTT
1 TTCTT
59236 GATTGGATCT
Statistics
Matches: 53, Mismatches: 4, Indels: 13
0.76 0.06 0.19
Matches are distributed among these distances:
13 10 0.19
14 8 0.15
15 24 0.45
16 11 0.21
ACGTcount: A:0.01, C:0.11, G:0.09, T:0.78
Consensus pattern (14 bp):
TTCTTTTTTTTTTG
Found at i:59222 original size:30 final size:31
Alignment explanation
Indices: 59169--59228 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
59159 CTTTTTGATT
*
59169 TTTGTTCTTTCTTTTTGTTCTTTTGTTTTTC
1 TTTGTTCTTTCTTTTTGTTCTTTTCTTTTTC
59200 TTTGTT-TTT-TTTTTGCTTCTTTTCTTTTT
1 TTTGTTCTTTCTTTTTG-TTCTTTTCTTTTT
59229 TGTTCTTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 6 0.22
30 15 0.56
31 6 0.22
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (31 bp):
TTTGTTCTTTCTTTTTGTTCTTTTCTTTTTC
Found at i:59227 original size:20 final size:19
Alignment explanation
Indices: 59155--59229 Score: 53
Period size: 21 Copynumber: 3.6 Consensus size: 19
59145 TTTTGTCCCT
59155 TTTTCTTTTTGATTTTTGTTC
1 TTTTCTTTTT--TTTTTGTTC
*
59176 -TTTCTTTTTGTTCTTTTGTTTT
1 TTTTC-TTTT-TT-TTTTG-TTC
*
59198 TCTTTGTTTTTTTTTTGCTTC
1 T-TTTCTTTTTTTTTTG-TTC
59219 TTTTCTTTTTT
1 TTTTCTTTTTT
59230 GTTCTTGATT
Statistics
Matches: 43, Mismatches: 5, Indels: 13
0.70 0.08 0.21
Matches are distributed among these distances:
20 14 0.33
21 17 0.40
22 5 0.12
23 4 0.09
24 3 0.07
ACGTcount: A:0.01, C:0.11, G:0.08, T:0.80
Consensus pattern (19 bp):
TTTTCTTTTTTTTTTGTTC
Found at i:62155 original size:9 final size:8
Alignment explanation
Indices: 62135--62201 Score: 53
Period size: 9 Copynumber: 7.6 Consensus size: 8
62125 ATAATAAACA
62135 AAAATAAT
1 AAAATAAT
62143 AAAATAAT
1 AAAATAAT
*
62151 GAAAATAAA
1 -AAAATAAT
*
62160 AATAAAAAT
1 AA-AATAAT
*
62169 AAAAATAAA
1 -AAAATAAT
62178 AAAATAAAAT
1 AAAAT--AAT
62188 AAAATGAAT
1 AAAAT-AAT
62197 AAAAT
1 AAAAT
62202 TAAAAAGTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
8 15 0.32
9 23 0.49
10 9 0.19
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (8 bp):
AAAATAAT
Found at i:62163 original size:6 final size:6
Alignment explanation
Indices: 62120--62191 Score: 65
Period size: 6 Copynumber: 11.7 Consensus size: 6
62110 AGTTAGTGAA
* * * *
62120 AAAAGAT AATAAAC AAAAAT AATAA- AATAAT GAAAAT AAAAAT AAAAAT
1 AAAA-AT AA-AAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
62169 AAAAAT AAAAAA ATAAAAT AAAA
1 AAAAAT AAAAAT A-AAAAT AAAA
62192 TGAATAAAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
5 5 0.09
6 37 0.69
7 10 0.19
8 2 0.04
ACGTcount: A:0.79, C:0.01, G:0.03, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:62197 original size:14 final size:13
Alignment explanation
Indices: 62134--62213 Score: 72
Period size: 14 Copynumber: 5.9 Consensus size: 13
62124 GATAATAAAC
62134 AAAAATAATAAAAT
1 AAAAA-AATAAAAT
*
62148 AATGAAAATAAAA-
1 AA-AAAAATAAAAT
*
62161 ATAAAAATAAAAAT
1 AAAAAAAT-AAAAT
62175 AAAAAAATAAAAT
1 AAAAAAATAAAAT
*
62188 AAAATGAATAAAAT
1 AAAA-AAATAAAAT
* *
62202 TAAAAAGTAAAA
1 AAAAAAATAAAA
62214 GGGTTAGTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
12 5 0.09
13 20 0.37
14 27 0.50
15 2 0.04
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.19
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:62241 original size:10 final size:10
Alignment explanation
Indices: 62226--62252 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
62216 GTTAGTTTTT
62226 AAAAAAAATA
1 AAAAAAAATA
62236 AAAAAAAATA
1 AAAAAAAATA
62246 AAAAAAA
1 AAAAAAA
62253 TTATTTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:69839 original size:46 final size:46
Alignment explanation
Indices: 69772--69859 Score: 149
Period size: 46 Copynumber: 1.9 Consensus size: 46
69762 ACAGGAGGTT
* *
69772 AATGCTAAGCAATATCGTAAATGATGCATGCAAAGTATTAAAAGTC
1 AATGCTAAGCAATACCATAAATGATGCATGCAAAGTATTAAAAGTC
*
69818 AATGCTAAGTAATACCATAAATGATGCATGCAAAGTATTAAA
1 AATGCTAAGCAATACCATAAATGATGCATGCAAAGTATTAAA
69860 GGTCTGGATC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.26
Consensus pattern (46 bp):
AATGCTAAGCAATACCATAAATGATGCATGCAAAGTATTAAAAGTC
Found at i:74219 original size:8 final size:9
Alignment explanation
Indices: 74141--74220 Score: 53
Period size: 8 Copynumber: 8.7 Consensus size: 9
74131 GTCTCTCAAT
74141 TATATATGA
1 TATATATGA
74150 TATTATATGTA
1 TA-TATATG-A
74161 TATCACATATGAA
1 TAT---ATATG-A
*
74174 AATATATGAA
1 TATATATG-A
74184 TATATAT-A
1 TATATATGA
74192 TATATAT-A
1 TATATATGA
74200 TATATATG-
1 TATATATGA
74208 T-TATATGA
1 TATATATGA
74216 T-TATA
1 TATATA
74221 AAAATCATTT
Statistics
Matches: 61, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
7 6 0.10
8 22 0.36
9 2 0.03
10 20 0.33
11 3 0.05
13 8 0.13
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (9 bp):
TATATATGA
Found at i:74515 original size:16 final size:16
Alignment explanation
Indices: 74480--74520 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
74470 GTTTACTTCA
74480 GAATGATTC-AACGCT
1 GAATGATTCAAACGCT
* *
74495 GAATGATTCAAATGTT
1 GAATGATTCAAACGCT
74511 GAATGATTCA
1 GAATGATTCA
74521 GAGGCTCTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.32
Consensus pattern (16 bp):
GAATGATTCAAACGCT
Found at i:76216 original size:6 final size:6
Alignment explanation
Indices: 76207--76237 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
76197 ACAACACGCA
76207 CGCACG CGCACG CGCACG CGCACG CGCACG C
1 CGCACG CGCACG CGCACG CGCACG CGCACG C
76238 ACACAAACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.52, G:0.32, T:0.00
Consensus pattern (6 bp):
CGCACG
Found at i:78497 original size:199 final size:197
Alignment explanation
Indices: 78146--78544 Score: 597
Period size: 199 Copynumber: 2.0 Consensus size: 197
78136 TTTATGGCAC
*
78146 TACAGTGGTTCTGTCTCTTCTTTTGTTCTTTCATTTTGCCTCACGTCAAGAGATGTTCAATTTAC
1 TACAGTGGTTCTGTCTCTTCTTTTGTTCTTTCATTTTGCCTCACGTCAAGAGATATTCAATTTAC
* * * *
78211 TAATGAAACATGTTCTCCGGATACATAAGGAGCGTTGCTGATTCTTTTCCGTATCTTTATCTTGT
66 TAATGAAACAGGTTCTCCAGAAACATAAGGAGCATTGCTGATTCTTTTCCGTATCTTTATCTTGT
* *
78276 TCCTGGAGGTCATAGTGTATATATGTATACATGTA-CCTGATTTGTTTTGCTTTTCCACCTTTGC
131 TCCTGGAGGTCATAG-GTATATA--TATACACGTAGCCTGATATGTTTTGCTTTTCCACCTTTGC
78340 TCACT
193 TCACT
* *
78345 TACAGTGGTTGTGTCTCTTCTTTTGTTCTTTCGTTTTGCCTCACGTCAAGAGATATTC-ATCTTA
1 TACAGTGGTTCTGTCTCTTCTTTTGTTCTTTCATTTTGCCTCACGTCAAGAGATATTCAAT-TTA
* *
78409 CTAATGAAACGGGGTTCTCCAGAAACATAAAGGAGCATTGCTGATTCTTTTCCGTTTCTTTATCT
65 CTAATGAAAC-AGGTTCTCCAGAAACAT-AAGGAGCATTGCTGATTCTTTTCCGTATCTTTATCT
* *
78474 TGTTCCTGGAGGTCATA-GTATATATATACACGTATGTCTGATATGTTTTTCTTTTCCACCTTTG
128 TGTTCCTGGAGGTCATAGGTATATATATACACGTA-GCCTGATATGTTTTGCTTTTCCACCTTTG
78538 CTCACT
192 CTCACT
78544 T
1 T
78545 GCAGGATGGA
Statistics
Matches: 182, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
197 9 0.05
198 2 0.01
199 107 0.59
200 13 0.07
201 51 0.28
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (197 bp):
TACAGTGGTTCTGTCTCTTCTTTTGTTCTTTCATTTTGCCTCACGTCAAGAGATATTCAATTTAC
TAATGAAACAGGTTCTCCAGAAACATAAGGAGCATTGCTGATTCTTTTCCGTATCTTTATCTTGT
TCCTGGAGGTCATAGGTATATATATACACGTAGCCTGATATGTTTTGCTTTTCCACCTTTGCTCA
CT
Found at i:84973 original size:11 final size:11
Alignment explanation
Indices: 84957--84992 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
84947 AACATTGGTA
84957 ATATATATAAT
1 ATATATATAAT
84968 ATATATATAAT
1 ATATATATAAT
84979 ATATATATGAAT
1 ATATATAT-AAT
84991 AT
1 AT
84993 GCAAGGGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 19 0.79
12 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (11 bp):
ATATATATAAT
Done.