genome.fa.s5097.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005097.1 Hibiscus syriacus cultivar Beakdansim tig00011460_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71053

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3899--3949	21	2.3	21	86	6	66	35	5	0	58	1.22
5187--5267	24	3.4	24	98	0	153	53	0	25	20	1.46
11074--11098	12	2.1	12	100	0	50	20	16	24	40	1.91
24318--24410	21	4.5	21	78	4	100	39	18	24	17	1.91
24318--24410	41	2.3	41	100	0	186	39	18	24	17	1.91
24337--24471	41	3.3	41	84	4	148	37	21	20	20	1.94
24399--24492	20	4.7	20	80	7	91	32	25	17	24	1.96
25011--25077	19	3.5	19	85	2	89	49	25	14	10	1.76
25073--25238	20	9.1	19	74	16	136	12	22	22	43	1.86
25078--25154	39	2.0	39	87	5	111	9	19	25	45	1.80
25126--25213	33	2.6	33	92	1	140	11	25	25	38	1.89
27237--27359	42	2.9	42	80	2	122	22	36	17	22	1.95
27293--27359	21	3.2	21	66	6	55	23	35	20	19	1.95
27827--27871	18	2.5	18	85	0	63	11	15	46	26	1.79
29493--29536	22	2.0	22	86	0	61	20	13	43	22	1.87
29704--29817	20	5.7	20	77	10	90	25	16	24	33	1.96
29806--29898	20	4.5	21	78	4	100	17	24	18	39	1.91
29745--29879	41	3.3	41	84	4	148	20	20	21	37	1.94
29806--29898	41	2.3	41	100	0	186	17	24	18	39	1.91
35244--35401	21	7.8	20	70	7	77	37	24	17	19	1.93
35369--35562	20	9.6	20	76	8	76	35	25	19	19	1.95
35369--35562	40	4.8	39	82	3	199	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35369--35561	60	3.2	60	83	0	251	35	25	19	19	1.95
35943--36013	33	2.2	33	92	0	115	11	22	18	47	1.80
36134--36188	14	3.6	14	73	21	56	41	23	25	9	1.83
36134--36204	33	2.2	33	94	0	124	43	25	22	8	1.81
36200--36297	19	5.7	19	70	22	81	10	24	22	42	1.84
36222--36311	14	5.7	14	74	23	81	8	25	23	42	1.83
36205--36319	33	3.5	33	95	0	212	9	24	20	45	1.81
38016--38394	92	4.1	93	98	0	735	22	12	18	46	1.83
38016--38396	185	2.1	185	97	1	737	22	12	18	46	1.82
38438--38566	19	7.3	19	75	17	125	45	28	17	8	1.77
38474--38566	33	2.8	32	91	4	150	46	27	18	7	1.76
38438--38566	52	2.5	52	74	14	140	45	28	17	8	1.77
38562--38696	19	7.6	19	75	16	128	11	19	23	45	1.82
38584--38640	14	3.7	14	77	20	60	10	21	22	45	1.82
38567--38659	33	2.8	33	95	0	168	10	20	21	47	1.80
41032--41189	21	7.8	20	70	7	77	37	24	17	19	1.93
41157--41467	20	15.5	20	81	6	79	34	26	19	20	1.96
41157--41546	40	9.7	40	87	2	439	35	25	18	20	1.95
41195--41546	20	17.6	19	85	5	398	34	25	18	21	1.96
42222--42268	24	2.0	24	87	8	69	25	14	21	38	1.92
42443--42467	12	2.1	12	100	0	50	72	0	28	0	0.86
44748--45020	19	15.4	19	81	15	345	46	17	21	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44748--45042	33	8.5	32	77	15	136	46	17	21	14	1.84
44776--45020	71	3.4	74	85	11	320	46	16	22	14	1.83
44776--45042	52	5.0	52	93	5	446	46	16	22	14	1.84
44748--45042	71	4.2	69	80	10	318	46	17	21	14	1.84
45049--45131	20	4.6	19	79	15	104	15	24	16	43	1.87
45238--45274	14	2.6	14	91	0	65	45	21	0	32	1.52
47225--47281	14	3.7	14	77	20	60	45	22	21	10	1.82
47206--47298	33	2.8	33	95	0	168	47	21	20	10	1.80
47169--47303	19	7.6	19	76	16	128	45	23	19	11	1.82
47299--47427	19	7.3	19	75	17	125	8	17	28	45	1.77
47299--47390	33	2.8	33	93	3	150	7	18	28	45	1.76
47471--47847	92	4.1	93	97	1	717	46	18	12	22	1.83
49554--49643	14	5.7	14	74	23	81	42	23	25	8	1.83
49546--49660	33	3.5	33	95	0	212	45	20	24	9	1.81
49553--49665	19	6.8	18	72	23	88	43	22	24	9	1.83
49677--49731	14	3.6	14	73	21	56	9	25	23	41	1.83
49661--49731	33	2.2	33	94	0	124	8	22	25	43	1.81
49672--49753	33	2.5	33	89	2	119	9	25	21	42	1.84
49684--49772	20	4.8	20	72	19	75	12	24	19	43	1.85
49852--49922	33	2.2	33	92	0	115	47	18	22	11	1.80
50104--50158	22	2.5	22	81	0	74	20	16	40	23	1.91
50304--50496	20	9.6	20	82	5	219	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50304--50496	60	3.2	60	83	0	251	19	19	25	35	1.95
55405--55587	58	3.1	58	85	0	249	36	19	6	37	1.78
55453--55760	125	2.5	122	75	7	307	36	18	5	39	1.73
55408--55760	58	5.8	62	72	14	241	36	18	5	39	1.75
55633--55766	64	2.0	66	84	7	175	37	18	4	39	1.71
56170--57495	228	5.8	225	84	4	1296	21	26	23	28	1.99
56170--57495	457	2.9	455	81	3	1241	21	26	23	28	1.99
58788--58813	3	8.7	3	100	0	52	69	0	0	30	0.89
59271--59312	17	2.6	16	82	14	50	19	4	0	76	0.96
59321--59388	24	2.8	25	72	16	63	13	7	5	73	1.23
61248--61294	19	2.4	19	92	3	76	10	10	8	70	1.35
64689--65881	164	7.2	164	81	4	1080	30	24	19	25	1.98
64689--65863	329	3.6	325	80	4	1164	30	24	19	25	1.98
64809--65854	248	4.2	247	84	1	1265	30	24	18	25	1.98
66848--66888	3	13.7	3	100	0	82	68	0	0	31	0.90
67331--67371	21	1.9	22	85	5	57	24	4	2	68	1.22
67968--68013	20	2.2	21	92	3	76	60	10	13	15	1.58
70908--70943	19	1.9	19	94	5	65	58	0	0	41	0.98

Tables:   1

The End!