genome.fa.s51.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000051.1 Hibiscus syriacus cultivar Beakdansim tig00000078_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190034

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2004--2032	11	2.5	12	94	5	51	72	17	3	6	1.21
16498--16764	111	2.4	109	84	4	342	40	20	13	25	1.89
16498--16764	56	4.9	54	73	7	225	40	20	13	25	1.89
16873--17038	56	3.1	54	70	18	139	40	18	12	28	1.87
17879--17914	18	2.0	18	88	0	54	22	50	16	11	1.77
17904--17943	16	2.6	15	88	7	62	15	35	22	27	1.94
22658--22729	18	4.3	18	76	16	82	19	48	18	13	1.81
22663--22729	31	2.2	31	91	0	107	19	47	17	14	1.82
22716--22757	8	5.5	8	83	11	61	16	35	23	23	1.95
22680--22716	13	2.8	13	83	0	56	18	48	18	13	1.80
22727--22758	7	4.4	7	92	7	55	12	34	28	25	1.92
22719--22757	15	2.6	15	95	0	69	15	35	23	25	1.94
26382--26416	2	17.5	2	100	0	70	51	0	0	48	1.00
29810--29867	27	2.2	26	81	9	64	62	6	1	29	1.31
30075--30122	25	2.0	24	84	12	62	54	4	2	39	1.32
30615--30691	14	5.6	14	63	6	50	28	22	22	27	1.99
30618--30690	27	2.7	27	100	0	146	30	21	20	27	1.98
31436--31462	2	13.5	2	100	0	54	51	0	48	0	1.00
31797--31869	10	6.9	11	67	9	53	35	2	1	60	1.20
31797--31869	21	3.5	21	84	0	101	35	2	1	60	1.20
32008--32066	21	2.9	21	87	2	84	35	5	5	54	1.45
31834--32199	197	1.8	198	92	1	626	24	13	15	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32208--32257	21	2.4	21	89	0	73	34	6	4	56	1.43
32199--32268	11	6.5	11	75	6	72	30	7	2	60	1.38
34018--34068	21	2.5	21	93	3	86	33	3	3	58	1.35
39754--39936	92	2.0	91	95	1	330	26	20	12	40	1.88
40153--40231	27	2.9	27	100	0	158	26	10	11	51	1.69
41802--41859	28	2.1	28	93	0	98	18	12	18	50	1.78
47105--47141	18	2.1	18	100	0	74	43	16	16	24	1.87
49295--49324	11	2.6	12	89	10	53	70	16	0	13	1.18
52806--52857	23	2.3	23	80	6	72	17	21	40	21	1.91
60827--61091	110	2.4	109	86	5	358	41	20	13	25	1.88
60844--61091	56	4.5	55	75	8	229	40	20	13	25	1.89
61204--61372	54	3.1	54	70	16	139	40	18	12	28	1.87
62742--62794	2	27.0	2	84	3	72	50	3	0	45	1.19
65336--65383	25	2.0	24	84	12	62	54	4	2	39	1.32
65877--65976	27	3.7	27	100	0	200	30	22	21	27	1.98
66719--66747	2	14.5	2	100	0	58	51	0	48	0	1.00
67079--67151	10	6.9	11	67	9	53	35	2	1	60	1.20
67079--67151	21	3.5	21	84	0	101	35	2	1	60	1.20
67289--67347	21	2.9	21	87	2	84	35	5	5	54	1.45
67116--67480	196	1.9	197	92	1	624	24	13	15	46	1.82
67489--67538	21	2.4	21	89	0	73	34	6	4	56	1.43
67480--67549	11	6.5	11	75	6	72	30	7	2	60	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69299--69349	21	2.5	21	90	3	77	31	3	3	60	1.33
75049--75231	92	2.0	91	95	1	330	26	20	12	40	1.88
75448--75526	27	2.9	27	100	0	158	26	10	11	51	1.69
77097--77154	28	2.1	28	93	0	98	18	12	18	50	1.78
91778--92167	110	3.6	109	74	8	328	42	18	12	26	1.86
94360--94391	16	2.0	16	100	0	64	37	6	37	18	1.76
94364--94399	16	2.2	16	90	0	54	41	5	30	22	1.76
101756--101803	2	24.0	2	100	0	96	50	0	0	50	1.00
102026--102371	110	3.2	110	84	4	423	42	19	13	24	1.88
102409--102586	54	3.2	53	69	19	121	41	17	12	28	1.86
105523--105602	10	8.3	9	76	13	70	17	25	28	28	1.97
105522--105600	19	4.1	19	80	9	79	18	22	29	29	1.98
105596--105636	17	2.4	17	95	0	73	17	41	24	17	1.89
105626--105668	7	6.4	7	89	10	72	16	30	30	23	1.96
105626--105664	13	3.0	13	100	0	78	15	30	30	23	1.95
105626--105668	20	2.2	20	91	8	70	16	30	30	23	1.96
106537--106660	63	2.0	63	82	9	155	16	27	29	26	1.97
106537--106660	31	4.0	32	72	12	80	16	27	29	26	1.97
108790--108847	27	2.2	26	81	9	64	62	6	1	29	1.31
109056--109103	25	2.0	24	84	12	62	54	4	2	39	1.32
109841--109913	27	2.7	27	97	0	137	30	20	23	26	1.99
109895--109931	18	2.1	18	100	0	74	32	21	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109803--109938	72	1.9	72	96	0	254	30	21	21	27	1.98
110684--110710	2	13.5	2	100	0	54	51	0	48	0	1.00
111046--111137	21	4.4	21	86	1	123	35	3	1	59	1.21
111276--111355	21	3.9	21	91	1	126	36	3	5	55	1.40
111498--111637	21	6.7	21	86	1	192	36	5	1	57	1.30
111069--111574	218	2.3	217	88	4	766	28	11	12	48	1.74
111495--111637	62	2.3	63	86	1	198	37	4	1	55	1.30
113347--113402	21	2.8	19	80	17	60	33	3	7	55	1.45
113353--113402	21	2.4	21	93	3	84	34	4	4	58	1.36
135087--135111	4	6.2	4	100	0	50	0	24	0	76	0.80
150321--150368	24	2.0	24	96	4	89	35	20	12	31	1.90
153473--153569	40	2.4	42	79	10	130	41	12	13	32	1.82
153512--153545	16	2.1	16	88	0	50	41	8	8	41	1.67
153528--153587	24	2.5	23	91	5	93	38	16	16	28	1.91
157911--157940	2	15.0	2	100	0	60	50	0	0	50	1.00
162737--162787	21	2.4	21	86	0	66	19	11	21	47	1.81
182916--182940	11	2.3	11	100	0	50	24	0	0	76	0.80
183531--183603	12	5.7	12	72	15	65	45	0	0	54	0.99
183520--183618	27	3.4	30	78	14	100	45	0	2	52	1.12
183536--183603	27	2.6	27	97	2	129	45	0	0	54	0.99
183785--183846	26	2.4	26	94	0	106	33	3	12	50	1.57
184851--184918	16	4.2	16	71	0	55	61	14	5	17	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186437--186473	14	2.8	14	84	8	51	72	0	0	27	0.84
186430--186494	18	3.7	17	74	16	53	73	1	1	23	1.00

Tables:   1

The End!