genome.fa.s5100.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005100.1 Hibiscus syriacus cultivar Beakdansim tig00011466_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60584

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1458--1501	20	2.2	20	87	0	61	36	11	11	40	1.77
3724--3764	19	2.2	18	87	12	57	34	4	4	56	1.42
10182--10234	21	2.5	21	81	0	61	43	22	32	1	1.64
10673--10917	43	5.8	42	81	8	239	35	24	18	21	1.95
10673--10863	42	4.5	42	86	3	242	37	26	16	18	1.92
10673--10872	85	2.4	84	83	6	253	36	26	18	19	1.94
10903--10992	43	2.1	43	87	0	126	31	18	14	35	1.91
10928--11035	43	2.5	43	80	0	108	34	24	11	30	1.90
11366--11396	8	3.9	8	95	0	53	41	6	0	51	1.27
15001--15035	17	1.9	19	88	11	56	40	5	0	54	1.24
16615--16675	31	2.0	31	90	0	95	42	21	14	21	1.88
16781--16814	17	2.0	17	100	0	68	35	29	11	23	1.90
19394--19442	21	2.3	21	82	6	64	51	20	0	28	1.48
19424--19491	28	2.4	28	92	0	91	51	26	0	22	1.48
19424--19495	14	5.1	14	81	0	81	50	27	0	22	1.50
19431--19495	28	2.3	28	94	0	112	50	27	0	21	1.49
20054--20111	20	2.9	19	82	7	71	43	5	24	27	1.75
21123--21196	2	37.0	2	95	0	130	47	1	1	50	1.18
26210--26283	30	2.5	30	95	0	130	40	8	6	44	1.60
27629--27672	21	2.1	21	87	8	63	59	2	4	34	1.30
28677--28727	25	2.0	25	100	0	102	7	27	19	45	1.78
28969--29307	169	2.0	169	100	0	678	21	10	22	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30643--30800	21	7.8	20	72	7	86	38	25	17	18	1.92
30767--30960	20	9.6	20	81	5	221	35	25	19	19	1.95
30767--30960	60	3.2	60	83	0	253	35	25	19	19	1.95
31341--31411	33	2.2	33	89	0	106	11	23	16	47	1.79
31491--31596	21	5.6	20	70	16	91	45	18	25	10	1.81
31489--31567	21	3.8	21	79	12	92	45	16	26	11	1.81
31484--31600	41	3.1	38	79	14	136	46	17	26	10	1.80
31554--31607	14	3.5	14	73	22	54	42	24	25	7	1.80
31543--31612	33	2.1	33	97	0	131	47	20	25	7	1.75
31549--31623	33	2.3	33	92	0	123	46	24	22	6	1.75
31619--31716	19	5.7	19	70	22	81	10	24	22	42	1.84
31641--31730	14	5.7	14	74	23	81	8	25	23	42	1.83
31624--31738	33	3.5	33	95	0	212	9	24	20	45	1.81
33400--33449	18	2.8	18	96	0	91	30	20	8	42	1.80
33454--33927	93	5.1	93	99	0	930	22	12	18	45	1.83
33971--34099	19	7.3	19	74	17	116	44	29	17	8	1.78
34007--34099	33	2.8	32	90	4	141	45	29	18	7	1.76
33971--34099	52	2.4	54	75	19	137	44	29	17	8	1.78
34095--34145	19	2.9	18	75	21	56	11	21	19	47	1.81
34513--34548	14	2.6	14	95	0	63	33	0	22	44	1.53
34655--34754	19	5.5	19	84	12	147	45	17	23	15	1.85
34655--34771	53	2.2	53	95	1	209	43	17	24	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34761--34909	19	8.6	19	73	21	139	15	22	18	43	1.87
34761--34877	52	2.2	52	95	0	207	16	21	17	44	1.87
34818--34909	33	2.8	33	98	1	175	13	23	18	44	1.85
34837--34891	14	3.6	14	73	21	56	10	23	20	45	1.82
34968--35065	19	5.4	19	83	13	134	44	17	23	14	1.85
34968--35084	53	2.2	53	96	1	218	43	17	24	13	1.86
37398--37422	12	2.1	12	100	0	50	0	28	0	72	0.86
37597--37643	24	2.0	24	87	8	69	38	21	14	25	1.92
38324--38573	20	12.5	20	87	1	268	19	18	24	37	1.94
38560--38642	21	4.0	21	73	6	78	25	16	24	33	1.96
38540--38638	42	2.4	43	77	11	100	21	18	23	37	1.94
41388--41420	9	3.8	9	84	8	50	45	0	0	54	0.99
47059--47131	18	4.1	17	77	10	74	82	1	16	0	0.75
47088--47131	11	4.0	11	85	5	54	84	0	15	0	0.63
47060--47130	28	2.6	28	82	8	92	81	1	16	0	0.76
47060--47131	7	10.4	7	79	11	69	81	1	16	0	0.75
48050--48116	28	2.4	28	97	0	125	41	19	22	16	1.90
48458--48591	51	2.6	52	84	1	189	40	20	18	20	1.92
50008--50761	119	6.4	119	90	3	1134	33	16	18	32	1.93
50350--50404	20	2.8	20	80	8	67	27	23	20	29	1.99
50895--50944	3	17.0	3	87	4	75	36	2	0	62	1.07
57513--57539	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57687--57725	18	2.2	19	90	9	64	64	0	0	35	0.94

Tables:   1

The End!