genome.fa.s5101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005101.1 Hibiscus syriacus cultivar Beakdansim tig00011468_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119937

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4138--4175	18	2.1	19	95	5	69	60	10	5	23	1.50
5735--5801	23	2.9	23	88	0	98	26	25	25	22	2.00
5817--6028	97	2.1	98	89	6	320	36	23	13	25	1.92
7232--7295	32	2.1	30	91	5	101	35	0	35	28	1.58
7260--7307	25	1.9	25	91	0	78	33	0	35	31	1.58
9403--9432	6	4.8	6	95	4	51	66	3	0	30	1.07
9779--9827	2	26.0	2	88	12	77	48	0	0	51	1.00
10597--10644	2	24.0	2	100	0	96	50	0	0	50	1.00
10644--10687	2	22.0	2	100	0	88	50	0	50	0	1.00
10746--10775	2	15.0	2	100	0	60	50	0	0	50	1.00
13494--13588	29	3.2	28	73	16	84	33	18	4	43	1.70
13478--13640	60	2.7	60	81	7	172	32	20	6	40	1.77
13502--13592	31	3.1	27	72	17	74	34	18	5	41	1.74
13997--14072	38	2.1	35	82	7	89	31	3	1	63	1.21
14919--14974	24	2.2	25	90	6	87	41	3	0	55	1.17
15306--15356	23	2.2	23	86	6	68	52	3	0	43	1.19
15757--15848	24	3.8	25	71	17	61	52	0	2	45	1.13
15740--15802	27	2.4	27	80	12	69	55	1	1	41	1.19
15941--15969	14	2.1	14	100	0	58	41	6	6	44	1.58
20629--20676	12	3.9	12	78	21	55	56	4	0	39	1.19
26606--26664	29	2.0	29	100	0	118	49	13	13	23	1.78
31289--31347	29	2.0	29	100	0	118	49	13	13	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33819--33882	23	2.8	23	74	9	67	31	25	23	20	1.98
33890--34115	103	2.2	103	95	0	407	37	23	12	26	1.90
35199--35226	11	2.5	11	100	0	56	57	0	28	14	1.38
35552--35702	76	2.0	76	96	0	275	43	13	22	19	1.87
36097--36131	15	2.3	15	95	0	61	28	8	28	34	1.87
40084--40130	23	2.0	23	87	0	67	44	8	8	38	1.65
43543--43684	60	2.3	60	79	5	135	34	17	2	45	1.63
43832--43981	60	2.5	60	77	8	153	41	2	24	31	1.69
52068--52100	3	11.0	3	100	0	66	66	0	33	0	0.92
55767--55799	2	17.0	2	93	6	59	48	0	0	51	1.00
60588--60733	59	2.5	60	79	9	165	41	6	21	30	1.79
60627--60765	60	2.3	59	82	3	154	44	6	17	31	1.74
65451--65516	12	5.6	12	83	3	80	12	15	46	25	1.80
65518--65574	24	2.3	25	77	17	66	42	0	0	57	0.98
67965--68045	25	3.2	25	96	3	146	35	13	12	38	1.82
70782--70898	44	2.6	45	95	1	209	19	13	25	41	1.88
73883--73950	27	2.6	27	93	4	113	42	16	10	30	1.81
77646--77713	27	2.6	27	95	4	122	41	16	11	30	1.84
82996--83042	23	2.0	24	87	4	69	38	4	8	48	1.53
88157--88184	6	4.7	6	100	0	56	67	0	14	17	1.22
88979--89028	15	3.3	15	86	5	66	30	2	0	68	1.01
92961--92998	16	2.4	16	90	0	58	34	10	5	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100391--100439	16	3.1	16	96	0	89	18	22	6	53	1.66
102448--102558	39	2.8	39	81	5	125	35	18	0	45	1.55
102606--102657	19	2.6	19	82	14	61	25	0	3	71	1.03
102722--102754	15	2.2	16	89	10	52	54	0	0	45	0.99
102844--102895	16	3.2	16	73	13	52	34	19	17	28	1.94
104020--104091	29	2.5	29	95	0	135	20	30	33	15	1.94
107433--107584	60	2.5	60	82	5	164	38	5	23	32	1.77
107472--107600	60	2.2	60	80	2	143	41	5	20	32	1.75
108382--108428	16	3.0	16	78	12	53	44	0	2	53	1.12
109692--109720	6	4.8	6	100	0	58	51	13	0	34	1.42
112192--112261	35	2.0	35	100	0	140	48	20	11	20	1.79
114933--114963	7	4.4	7	95	0	53	25	25	29	19	1.99
114953--115016	22	2.9	22	90	6	103	10	21	46	20	1.81
115029--115103	29	2.5	31	89	8	120	29	26	26	17	1.97
115014--115103	9	9.4	9	81	9	72	27	25	28	17	1.98

Tables:   1

The End!