Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005102.1 Hibiscus syriacus cultivar Beakdansim tig00011469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67212

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1194--1231
2
19.0
2
100
0
76
50
0
0
50
1.00
2157--2207
16
3.1
16
94
2
84
37
9
0
52
1.34
7372--7413
21
2.0
21
90
0
66
26
30
19
23
1.98
13621--13691
35
2.0
35
97
0
133
26
8
19
45
1.79
15254--15284
10
3.1
10
90
0
53
29
0
22
48
1.51
17607--17670
27
2.3
29
87
12
91
12
18
10
57
1.63
17596--17670
28
2.7
28
83
12
100
12
20
10
57
1.64
17661--17700
20
2.0
20
90
0
62
12
5
10
72
1.26
18661--18714
26
2.2
26
83
12
69
38
1
1
57
1.20
18987--19067
32
2.5
33
93
2
137
39
24
17
18
1.92
19378--19406
12
2.3
13
94
5
51
68
0
0
31
0.89
21296--21573
84
3.3
82
82
4
236
25
19
23
30
1.98
21620--21716
20
5.2
20
66
26
70
42
18
17
21
1.89
21610--22103
36
14.1
36
76
12
415
39
13
19
26
1.90
21683--21867
99
1.8
101
82
5
241
40
14
19
25
1.90
21610--22058
172
2.6
173
87
5
642
40
14
19
25
1.89
27902--27982
40
2.0
40
100
0
162
53
19
0
27
1.46
27916--27984
21
3.4
21
64
28
58
50
18
0
30
1.47
35243--35368
47
2.8
46
84
5
159
30
22
7
39
1.82
36285--36778
246
2.0
245
96
3
904
38
25
6
30
1.80
39580--39640
23
2.7
23
92
2
97
22
32
26
18
1.97
41302--41484
95
1.9
94
93
3
314
30
18
19
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44770--44819
21
2.4
21
86
6
66
32
24
6
38
1.79
48043--48084
19
2.3
19
87
4
59
16
28
38
16
1.91
48092--48136
18
2.6
18
89
3
65
20
44
24
11
1.83
48131--48292
29
5.8
28
73
9
141
32
5
21
40
1.76
49317--49385
26
2.7
26
93
0
120
30
8
15
44
1.77
55519--55595
19
4.1
19
85
6
102
19
29
31
19
1.96
55529--55595
10
7.0
10
68
21
54
19
29
31
19
1.96
55527--55597
9
7.6
9
71
20
56
18
30
30
19
1.96
55594--55639
17
2.6
18
93
3
76
21
47
19
10
1.80
55639--55818
29
6.3
27
79
10
157
32
6
23
37
1.81
55639--55827
56
3.3
56
79
7
175
32
6
23
38
1.80
57466--57814
55
6.3
55
89
0
500
24
18
17
39
1.91
58142--58212
19
3.5
19
80
12
79
33
19
15
30
1.93
64095--64587
81
6.1
81
90
0
752
32
21
10
36
1.87
66637--66676
21
1.9
21
89
0
62
42
12
17
27
1.85

Tables:   1

The End!