Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005103.1 Hibiscus syriacus cultivar Beakdansim tig00011472_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77010

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5234--5272
20
2.0
20
84
0
51
23
7
23
46
1.78
5423--5525
20
4.9
20
81
8
100
14
25
35
24
1.93
14060--14155
31
3.1
31
80
3
113
26
18
21
33
1.97
14662--14696
11
3.2
11
95
0
61
28
11
28
31
1.92
16274--16326
22
2.4
21
75
9
52
35
13
3
47
1.61
21754--21811
30
1.9
31
82
10
75
12
6
39
41
1.69
22146--22473
118
2.8
117
87
4
469
25
20
15
38
1.92
33023--33073
22
2.3
22
93
0
84
31
25
25
17
1.97
33031--33075
22
2.0
22
100
0
90
26
26
26
20
1.99
33295--33354
30
2.0
31
86
3
86
35
21
6
36
1.80
33715--33864
66
2.3
66
87
3
203
17
26
27
28
1.97
33844--33886
21
2.0
21
86
0
59
16
25
27
30
1.97
39905--39955
22
2.3
22
89
0
75
31
25
23
19
1.98
39913--39957
22
2.0
22
95
0
81
26
26
24
22
2.00
40177--40236
30
2.0
31
86
3
86
35
21
6
36
1.80
40598--40750
68
2.3
67
88
2
216
16
27
27
28
1.97
40730--40772
21
2.0
21
86
0
59
16
25
27
30
1.97
44916--44943
6
4.7
6
100
0
56
0
0
28
71
0.86
45306--45336
14
2.1
15
94
5
55
51
0
12
35
1.40
45936--45968
17
2.0
17
88
5
50
48
6
3
42
1.43
48921--48962
22
1.9
22
85
9
59
16
11
9
61
1.55
50168--50233
23
2.9
23
75
4
71
36
22
7
33
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52098--52267
15
11.3
15
63
12
62
25
35
4
34
1.75
52140--52268
45
2.9
43
71
15
109
25
35
5
33
1.79
52314--52402
15
5.9
15
69
12
58
30
39
1
29
1.64
52053--52387
30
11.2
30
82
3
295
25
34
4
34
1.77
52032--52376
120
2.9
119
82
5
408
25
34
5
34
1.78
58280--58332
23
2.3
23
90
0
79
20
30
20
28
1.98
60093--60141
24
2.0
24
100
0
98
40
0
22
36
1.54
60533--60575
20
2.1
21
86
4
61
25
27
32
13
1.94
64085--64126
21
2.0
21
86
9
59
30
0
0
69
0.89
67450--67479
14
2.2
14
94
5
53
70
6
0
23
1.11
70909--70954
17
2.7
17
86
6
58
2
19
2
76
1.00

Tables:   1

The End!