Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005104.1 Hibiscus syriacus cultivar Beakdansim tig00011473_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120941

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2599--2624
13
2.0
13
100
0
52
0
38
7
53
1.30
7247--7293
21
2.3
21
82
7
62
57
2
0
40
1.11
7483--7669
31
5.6
31
66
17
108
25
12
11
50
1.74
7465--7671
68
3.0
67
92
1
342
26
12
11
49
1.75
7752--7815
32
2.0
32
96
0
119
26
6
18
48
1.72
8963--8991
2
14.5
2
100
0
58
48
0
0
51
1.00
30066--30107
11
3.4
12
75
18
50
59
0
0
40
0.97
33944--33970
2
13.5
2
100
0
54
48
0
0
51
1.00
42490--42524
18
2.0
17
88
5
52
14
8
0
77
0.99
51986--52019
17
2.1
16
88
5
50
14
8
0
76
1.01
55086--55136
2
26.5
2
76
7
52
47
0
0
52
1.00
58371--58400
14
2.1
14
93
0
51
63
0
3
33
1.11
59619--59703
30
2.8
30
78
7
100
61
8
15
15
1.56
61178--61229
3
17.3
3
100
0
104
65
0
0
34
0.93
62690--62738
23
2.2
23
81
3
55
16
10
4
69
1.32
69797--69842
2
23.0
2
100
0
92
50
0
0
50
1.00
70173--70214
2
21.0
2
100
0
84
50
0
0
50
1.00
79437--79526
3
28.7
3
71
22
53
33
0
0
66
0.92
79437--79531
16
5.6
16
75
18
77
34
0
0
65
0.93
79438--79524
26
3.3
26
74
17
83
32
0
0
67
0.91
79439--79527
13
7.2
13
69
21
57
33
0
0
66
0.92
79597--79691
16
5.6
16
72
20
77
36
1
0
62
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79398--79698
160
1.9
161
92
2
507
36
2
0
60
1.15
79647--79692
19
2.5
19
82
3
58
36
2
0
60
1.09
81621--81706
40
2.2
38
84
13
113
31
10
5
52
1.59
82474--82508
18
1.9
18
88
11
54
51
0
45
2
1.16
89045--89093
23
2.1
23
84
0
62
77
10
4
8
1.10
91991--92024
16
2.2
15
89
5
50
52
14
2
29
1.56
92524--92556
17
1.9
17
93
0
57
30
0
6
63
1.18
92898--92929
15
2.3
15
89
10
50
68
0
0
31
0.90
94869--94935
29
2.3
30
92
2
109
28
1
2
67
1.14
94869--94943
29
2.6
27
82
16
87
29
1
2
66
1.13
95092--95253
31
5.2
29
77
14
112
51
0
4
43
1.26
95124--95261
66
2.1
67
87
5
201
50
0
4
44
1.27
95846--95884
18
2.2
18
86
9
53
23
25
7
43
1.80
108911--109745
120
7.0
120
78
3
760
28
26
15
28
1.96
108911--109941
239
4.4
240
77
6
764
28
27
15
28
1.96
110928--110964
2
18.5
2
100
0
74
51
0
0
48
1.00
110964--110997
2
17.0
2
100
0
68
50
0
50
0
1.00
111948--111987
19
2.0
20
86
13
57
55
5
5
35
1.44
112939--112995
26
2.1
27
84
9
73
56
21
3
19
1.57
112994--113029
5
7.2
5
93
0
63
58
19
0
22
1.40
117471--117674
102
2.0
102
98
0
390
40
8
9
41
1.69
118046--118076
3
10.0
3
93
6
53
35
0
0
64
0.94

Tables:   1

The End!