genome.fa.s5105.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005105.1 Hibiscus syriacus cultivar Beakdansim tig00011474_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58216

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67--775	185	3.7	191	85	9	906	32	15	17	34	1.91
2245--2280	15	2.4	16	90	9	58	36	11	5	47	1.63
4311--4345	18	1.9	18	94	0	61	8	31	17	42	1.79
4316--4354	18	2.2	18	90	0	60	12	25	17	43	1.85
5250--5568	140	2.3	137	88	6	452	24	20	14	40	1.90
7232--7331	41	2.4	40	82	12	114	52	0	3	45	1.16
17638--17734	15	6.4	14	72	15	52	56	1	2	40	1.18
17676--17734	14	4.4	14	73	16	61	57	0	3	38	1.15
23911--24093	56	3.3	56	85	3	278	30	13	15	40	1.85
24320--24401	21	4.0	20	69	12	67	23	23	18	35	1.96
24391--24442	21	2.5	21	87	3	70	38	17	23	21	1.93
24428--24525	41	2.4	41	91	0	151	38	23	17	20	1.93
24431--24525	20	4.7	20	74	11	77	36	24	17	21	1.94
24684--24727	22	2.0	22	95	0	79	20	45	15	18	1.85
24975--25033	20	3.0	20	87	0	73	15	18	22	44	1.87
26352--26399	18	2.7	18	93	0	87	27	45	12	14	1.81
26934--26989	20	2.8	20	83	2	69	37	23	23	16	1.93
26973--27069	19	5.6	19	69	22	88	47	18	18	15	1.83
26973--27066	33	2.8	33	91	0	143	47	18	18	15	1.82
27076--27141	19	3.7	19	75	19	79	12	19	21	46	1.82
27126--27200	20	3.8	20	85	1	98	17	25	22	34	1.96
27188--27226	20	2.0	20	94	0	69	25	12	28	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27568--27628	21	3.0	20	73	7	68	22	42	13	21	1.87
27568--27656	42	2.1	42	87	4	126	22	41	14	21	1.89
27591--27671	21	3.9	21	73	0	72	22	35	19	22	1.96
29065--29103	14	2.8	14	84	0	51	35	0	17	46	1.49
29243--29326	19	4.7	19	82	11	115	46	17	21	14	1.84
29906--30043	41	3.4	41	75	9	147	22	18	23	35	1.95
29926--30040	20	5.7	20	82	6	115	23	19	25	32	1.97
29906--30061	41	3.8	41	73	3	127	23	19	23	34	1.96
37090--37178	29	3.1	29	95	0	160	15	30	34	19	1.93
37475--37548	10	7.0	10	73	22	62	24	36	27	12	1.91
37495--37549	20	2.8	20	88	0	92	27	36	25	10	1.89
37536--37617	23	3.6	23	88	0	119	26	25	35	12	1.91
37667--37723	10	5.4	10	78	12	60	8	40	26	24	1.84
37663--37747	33	2.6	33	92	0	134	9	37	28	24	1.86
37729--37758	14	2.1	14	93	0	51	6	30	36	26	1.82
38123--38149	14	1.9	14	100	0	54	22	37	33	7	1.82
38205--38282	29	2.7	29	97	0	147	23	28	34	14	1.93
38478--38505	2	14.0	2	100	0	56	50	0	0	50	1.00
38501--38535	17	2.1	17	94	0	61	37	8	5	48	1.58
41667--41707	21	2.0	20	90	4	64	51	0	0	48	1.00
57967--58216	30	8.5	30	78	7	244	57	11	14	16	1.66
57967--58177	89	2.4	89	80	7	232	56	11	14	17	1.66

Tables:   1

The End!