Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005106.1 Hibiscus syriacus cultivar Beakdansim tig00011478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63058

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4306--4339
11
3.1
11
91
0
59
64
2
0
32
1.08
7919--8099
41
4.4
41
79
7
179
29
18
19
32
1.96
7970--8191
81
2.7
83
82
2
259
33
18
19
29
1.95
8312--8372
25
2.4
25
94
0
104
9
40
6
42
1.64
16975--17038
23
2.8
23
74
9
67
29
23
25
21
1.99
21310--21411
23
4.4
23
94
0
159
29
26
26
17
1.98
22776--22882
23
4.7
23
96
0
187
26
26
28
18
1.98
23922--23992
2
35.5
2
100
0
142
49
0
0
50
1.00
28298--28441
72
2.0
72
98
0
279
31
21
16
29
1.95
35485--35523
20
2.0
20
90
10
62
30
12
33
23
1.92
36779--36939
64
2.5
65
86
7
204
33
18
21
26
1.96
37429--37463
18
1.9
18
88
11
54
54
5
17
22
1.64
38374--38833
147
3.1
147
96
1
825
26
17
21
34
1.96
38801--38845
23
2.0
23
90
0
72
22
26
26
24
2.00
41947--42107
64
2.5
65
86
7
204
33
18
21
26
1.96
42596--42630
18
1.9
18
88
11
54
54
5
17
22
1.64
43541--43850
149
2.1
149
93
2
534
26
17
21
33
1.96
43818--43862
23
2.0
23
90
0
72
22
26
26
24
2.00
44964--45001
2
19.0
2
100
0
76
0
50
0
50
1.00
52574--52608
15
2.3
15
100
0
70
28
34
22
14
1.93

Tables:   1

The End!