Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005107.1 Hibiscus syriacus cultivar Beakdansim tig00011479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93050

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2933--2968
15
2.4
15
86
13
56
66
13
11
8
1.44
11120--11154
2
17.5
2
93
0
61
51
2
0
45
1.16
14134--14159
12
2.2
12
100
0
52
0
34
42
23
1.54
21965--22000
14
2.6
14
90
0
54
36
2
0
61
1.11
23447--23480
2
17.0
2
100
0
68
50
0
50
0
1.00
30004--30103
19
5.2
18
78
12
101
54
14
1
31
1.47
30001--30103
40
2.6
38
80
11
120
52
13
0
33
1.47
32288--32366
36
2.2
36
84
4
97
34
13
36
15
1.87
32299--32368
36
1.9
36
88
0
104
32
14
35
17
1.90
32421--32556
4
37.0
4
66
16
71
49
0
0
50
1.00
32425--32556
38
3.3
41
86
9
200
49
0
0
50
1.00
35253--35314
17
3.6
17
71
6
54
32
0
0
67
0.91
36981--37045
31
2.1
31
91
0
103
49
4
3
43
1.39
38539--38599
31
2.0
30
87
3
86
42
0
22
34
1.54
45298--45368
31
2.3
30
90
2
106
38
2
25
33
1.71
45546--45604
24
2.4
25
88
5
93
23
20
22
33
1.97
45561--45641
26
3.2
24
83
10
83
22
28
23
25
1.99
46446--46478
10
3.4
10
83
8
50
69
0
0
30
0.88
47089--47118
7
4.3
7
95
0
51
63
23
0
13
1.29
47280--47313
16
2.1
16
88
0
50
58
5
2
32
1.37
47992--48021
15
2.0
15
93
0
51
63
0
0
36
0.95
51755--51799
22
2.0
22
87
8
65
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53288--53529
122
2.0
119
81
7
283
38
7
8
45
1.63
59387--59502
7
14.3
7
71
25
70
75
0
20
4
0.98
59390--59502
17
6.8
17
85
3
131
74
0
21
4
0.99
59392--59502
51
2.2
49
87
4
159
74
0
20
4
0.99
61662--61881
114
1.9
114
89
1
343
32
14
21
31
1.93
63958--64111
50
2.9
52
78
8
170
38
14
22
24
1.91
65184--65676
76
6.5
76
95
1
844
23
20
22
34
1.97
65184--65676
229
2.2
229
94
0
862
23
20
22
34
1.97
65804--65849
3
15.7
3
80
13
51
39
0
0
60
0.97
65812--65861
16
3.2
16
78
21
61
40
0
0
60
0.97
65806--65868
14
4.4
14
80
13
67
41
0
0
58
0.98
67433--67474
20
2.2
19
86
4
57
33
0
2
64
1.07
67327--67566
120
2.0
119
82
5
288
38
7
7
45
1.63
75353--75386
11
3.1
11
87
12
52
2
8
8
79
1.03
75714--76140
132
3.2
133
85
2
556
30
18
19
30
1.96
77214--77368
31
5.0
31
89
3
233
36
21
20
20
1.95
77214--77368
61
2.5
62
90
3
242
36
21
20
20
1.95
78129--78173
21
2.1
21
87
0
63
15
24
28
31
1.96
81153--81308
31
5.0
31
91
1
242
36
22
20
20
1.95
82075--82118
20
2.1
21
87
4
63
15
22
29
31
1.95
83106--83235
42
3.1
41
75
9
120
32
23
18
25
1.97
83272--83527
43
6.0
43
93
0
424
27
32
13
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85522--85552
10
3.0
10
95
4
53
9
3
0
87
0.66
85513--85563
11
4.5
11
83
14
52
9
7
1
80
0.98
90913--90959
16
3.1
15
79
8
51
23
2
6
68
1.24
92398--92557
64
2.5
66
82
6
186
31
24
16
27
1.97

Tables:   1

The End!