genome.fa.s5109.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005109.1 Hibiscus syriacus cultivar Beakdansim tig00011482_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62108

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1740--1776	19	1.9	19	88	0	56	35	29	13	21	1.92
1835--1884	20	2.5	20	96	0	91	28	30	20	22	1.98
1802--1867	34	1.9	34	87	0	96	28	25	19	25	1.99
2820--2874	28	2.0	28	92	0	92	34	14	18	32	1.91
3943--3986	22	2.0	23	86	4	63	68	4	2	25	1.20
18629--18654	3	8.7	3	100	0	52	34	0	0	65	0.93
19877--19920	8	5.5	8	83	0	61	59	0	0	40	0.98
19877--19923	24	2.0	23	95	4	85	61	0	0	38	0.96
25739--25811	35	2.1	35	89	0	110	34	6	6	52	1.55
27071--27144	16	4.4	16	69	20	53	59	2	4	33	1.30
27063--27177	50	2.2	52	88	8	166	63	3	2	30	1.24
27978--28008	13	2.4	13	94	0	53	9	38	16	35	1.81
28856--29028	20	8.6	20	83	6	206	35	27	18	18	1.94
29406--29478	33	2.2	33	92	2	121	12	21	17	47	1.80
29558--29664	21	5.6	20	73	17	102	46	18	21	13	1.83
29619--29675	14	3.7	14	75	20	60	43	22	24	8	1.81
29612--29691	33	2.4	33	95	0	142	47	22	21	8	1.78
29687--29786	19	5.1	19	85	4	119	12	24	18	46	1.82
31471--31786	93	3.4	93	97	0	596	22	13	18	44	1.85
31902--31958	14	3.7	14	72	20	51	43	24	22	8	1.81
31916--32007	19	5.4	18	72	24	65	46	28	17	7	1.75
31884--32007	33	3.7	33	91	1	185	45	27	17	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31933--31991	14	3.9	14	76	20	64	47	28	16	6	1.72
32003--32175	19	9.6	19	76	12	150	10	20	23	45	1.82
32008--32100	33	2.8	33	96	0	168	11	21	20	46	1.82
32003--32141	52	2.7	52	74	12	140	10	21	22	46	1.81
32003--32175	33	4.8	38	81	8	159	10	20	23	45	1.82
34100--34135	14	2.6	14	95	0	63	33	0	22	44	1.53
34242--34320	19	4.4	19	80	16	105	45	17	22	13	1.84
34260--34338	34	2.4	34	97	2	151	43	18	25	12	1.86
34335--34604	105	2.6	109	91	7	434	13	22	17	45	1.84
34357--34590	72	3.3	72	81	10	297	14	22	17	46	1.84
34335--34604	53	5.1	52	90	8	415	13	22	17	45	1.84
36888--36912	12	2.1	12	100	0	50	0	28	0	72	0.86
37087--37133	24	2.0	24	87	8	69	38	21	14	25	1.92
37826--38094	20	13.4	20	84	1	252	19	16	25	38	1.92
38062--38159	21	4.8	20	75	10	81	21	19	21	37	1.94
38062--38160	42	2.4	43	77	11	100	21	19	22	37	1.94
40298--40344	19	2.5	20	77	19	55	17	8	8	65	1.44
43422--43469	21	2.4	20	80	10	53	58	14	6	20	1.58
45229--45341	35	3.2	35	87	2	156	41	23	0	33	1.61
46359--46470	35	3.2	35	83	0	134	36	0	19	42	1.58
49605--49668	28	2.3	28	100	0	128	37	42	6	14	1.70
54710--54742	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57101--57256	70	2.2	70	87	5	228	36	12	10	40	1.78
58763--58789	12	2.2	12	100	0	54	22	25	11	40	1.87
59861--59893	2	16.5	2	100	0	66	51	0	0	48	1.00

Tables:   1

The End!