genome.fa.s511.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000511.1 Hibiscus syriacus cultivar Beakdansim tig00000973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194173

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1519--1549	3	10.3	3	92	0	53	3	32	0	64	1.09
2672--2722	19	2.6	19	81	3	66	19	15	23	41	1.90
2708--2759	20	2.5	20	71	3	50	23	25	23	28	1.99
2747--2800	20	2.7	21	77	8	67	29	14	27	27	1.95
7842--7941	42	2.4	42	93	0	173	52	16	24	8	1.70
22485--22599	59	1.9	59	100	0	230	44	5	16	33	1.70
24161--24185	12	2.1	12	100	0	50	20	16	24	40	1.91
31650--31689	18	2.2	18	100	0	80	25	47	0	27	1.52
44281--44335	20	2.8	20	81	8	67	29	23	10	36	1.89
44328--44373	17	2.5	20	89	10	71	32	21	10	34	1.88
44511--44548	16	2.4	16	86	4	51	28	5	0	65	1.14
47578--47613	18	2.0	18	88	0	54	55	22	2	19	1.56
47919--47983	20	3.2	20	91	0	103	16	12	26	44	1.83
49175--49215	18	2.2	20	86	8	59	39	7	7	46	1.60
49428--49463	18	2.0	18	88	0	54	33	27	22	16	1.95
49451--49485	15	2.4	15	90	4	54	28	31	20	20	1.97
49716--49758	23	1.9	22	86	13	61	44	16	2	37	1.60
50454--50686	117	2.0	118	97	2	443	34	18	3	43	1.68
56128--56168	20	2.0	20	86	9	57	39	9	7	43	1.65
57055--57092	20	1.9	20	94	0	67	23	31	26	18	1.97
58704--58737	4	8.5	4	86	0	50	70	2	0	26	1.01
58847--58886	21	1.9	21	89	0	62	37	30	10	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58956--59008	21	2.5	21	84	0	70	35	30	13	20	1.91
63507--63557	20	2.5	20	90	3	75	37	19	17	25	1.94
63734--63776	22	2.0	22	95	0	77	23	46	11	18	1.82
64137--64185	20	2.5	20	83	3	64	12	14	22	51	1.75
64826--64886	13	4.7	13	87	0	95	26	18	19	36	1.94
64826--64893	26	2.6	26	88	0	82	26	17	17	38	1.92
65549--65596	20	2.4	19	76	10	51	27	12	22	37	1.90
67369--67413	21	2.1	21	83	0	54	31	31	24	13	1.93
67438--67486	22	2.2	22	82	7	64	32	30	28	8	1.86
68467--68591	31	4.0	31	92	2	198	20	18	23	37	1.94
71555--71599	21	2.1	21	83	0	54	31	31	24	13	1.93
71624--71672	22	2.2	22	82	7	64	32	30	28	8	1.86
72663--72808	62	2.4	62	90	2	204	21	17	23	36	1.94
72653--72793	31	4.5	31	95	0	246	20	18	21	39	1.93
74010--74036	13	2.1	13	100	0	54	37	14	25	22	1.93
74433--74518	43	2.0	43	88	0	127	29	19	5	45	1.74
76853--77355	249	2.0	252	83	4	633	21	18	18	41	1.90
83202--83253	16	3.2	17	72	22	58	42	0	21	36	1.53
108279--108377	33	3.0	33	87	1	144	22	14	27	36	1.92
109705--109742	14	2.6	14	91	4	58	26	15	31	26	1.96
132140--132195	28	2.0	28	100	0	112	32	7	17	42	1.77
132149--132207	28	2.2	27	82	8	68	30	10	15	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133273--133384	9	11.8	9	68	19	50	46	0	5	48	1.25
133274--133415	68	2.1	67	88	1	203	49	0	4	45	1.23
133342--133391	9	5.7	9	81	11	59	54	0	2	44	1.11
133342--133381	19	2.2	18	86	4	53	57	0	2	40	1.12
133359--133405	8	5.5	8	83	16	51	51	0	2	46	1.13
137549--137590	18	2.3	18	88	12	50	71	2	4	21	1.16
137672--137734	29	2.1	29	83	13	76	55	3	1	39	1.25
137727--137757	14	2.2	14	94	0	53	64	0	0	35	0.94
138869--138905	10	3.5	11	82	10	51	21	5	5	67	1.31
142083--142143	23	2.7	23	100	0	122	16	26	27	29	1.97
143901--143975	31	2.7	27	78	15	73	73	0	9	17	1.09
144244--144302	31	1.9	31	89	0	91	59	3	5	32	1.36
145681--146100	102	4.1	102	94	0	716	37	13	18	30	1.89
145847--145970	64	1.9	66	86	3	180	37	13	18	29	1.89
145681--146107	203	2.1	203	94	0	746	37	13	18	30	1.89
146052--146149	50	2.0	50	82	8	119	43	13	17	25	1.85
146111--146180	21	3.6	21	67	21	62	41	12	20	25	1.88
146102--146180	36	2.2	36	93	0	131	40	12	20	26	1.88
146015--146180	86	1.9	87	86	1	235	40	13	18	26	1.88
146552--146919	106	3.5	106	87	2	524	22	18	25	33	1.96
148225--148403	95	1.9	95	92	2	306	29	19	18	32	1.96
152052--152103	9	5.9	9	80	17	56	75	0	3	21	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152381--152437	21	2.6	22	78	15	57	61	7	1	29	1.32
152389--152437	23	2.1	22	85	7	62	63	8	2	26	1.34
152396--152437	22	1.9	21	85	9	57	64	9	2	23	1.35
159604--159643	17	2.4	17	95	0	71	45	2	25	27	1.66
163786--163828	20	2.1	21	87	8	63	18	13	0	67	1.23
163785--163834	20	2.5	20	75	15	59	18	18	0	64	1.30
168068--168112	22	2.0	22	95	0	81	24	33	22	20	1.97
168710--168755	23	2.0	23	91	0	74	30	26	26	17	1.97
170448--170499	22	2.4	22	96	0	95	40	23	1	34	1.66
170956--171076	64	1.9	63	91	1	197	28	21	15	33	1.94
180884--180937	28	1.9	29	82	14	69	42	5	18	33	1.73
181184--181212	15	1.9	15	100	0	58	20	0	17	62	1.33
184838--184876	13	3.2	13	85	14	64	48	25	0	25	1.51

Tables:   1

The End!