genome.fa.s5111.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005111.1 Hibiscus syriacus cultivar Beakdansim tig00011487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61242

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11809--11915	56	1.9	55	96	1	196	39	5	3	51	1.43
12237--12308	28	2.5	31	82	11	89	43	4	0	52	1.20
12234--12286	25	2.1	27	82	10	67	39	1	0	58	1.09
12212--12310	30	3.4	28	76	10	92	43	4	0	52	1.20
12298--12774	121	4.0	121	86	4	633	39	9	3	46	1.54
12299--12782	120	4.0	121	88	1	686	39	9	3	47	1.54
12299--12782	241	2.0	241	90	1	756	39	9	3	47	1.54
14100--14149	10	5.1	10	80	9	50	60	2	6	32	1.32
15128--15177	21	2.6	18	84	9	64	54	4	0	42	1.19
15131--15176	18	2.6	18	86	6	58	52	4	0	43	1.21
19905--19965	23	2.7	23	89	2	88	19	22	32	24	1.97
21932--21992	29	2.1	30	84	3	79	40	4	18	36	1.72
24017--24060	23	2.0	22	82	13	54	29	4	13	52	1.60
24220--24381	49	3.3	49	92	0	270	20	16	27	35	1.94
26796--26840	23	2.0	23	86	0	63	26	26	26	20	1.99
28659--28703	21	2.1	21	87	0	63	15	24	28	31	1.96
31982--32026	23	2.0	23	81	0	54	26	24	26	22	2.00
35007--35051	23	2.0	23	81	0	54	26	24	26	22	2.00
36874--36918	21	2.1	21	87	0	63	15	24	28	31	1.96
40119--40161	21	2.0	21	100	0	86	41	16	18	23	1.89
40686--40746	29	2.1	30	87	3	88	39	4	19	36	1.74
42752--42795	23	2.0	22	82	13	54	29	4	13	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42782--42888	53	2.0	53	83	7	137	32	2	20	43	1.66
42952--43111	49	3.3	49	93	0	275	19	16	28	36	1.93
47605--47644	17	2.4	17	95	0	71	50	2	22	25	1.62
48848--48931	24	3.5	24	100	0	168	25	28	17	28	1.98
50006--50102	25	3.9	24	80	12	90	1	27	0	71	0.93
50022--50102	16	4.9	17	77	14	66	1	28	0	70	0.95
50009--50102	43	2.2	42	84	7	118	1	27	0	71	0.93
55806--55910	48	2.2	48	84	0	147	26	21	27	23	1.99
56945--56990	22	2.1	22	95	0	83	30	13	36	19	1.90

Tables:   1

The End!