Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005113.1 Hibiscus syriacus cultivar Beakdansim tig00011494_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75393

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1082--1121
14
2.8
15
88
7
57
42
0
0
57
0.98
1091--1124
8
4.4
8
85
7
52
38
0
0
61
0.96
33628--33663
17
2.1
17
100
0
72
36
5
5
52
1.48
41038--41096
31
1.9
31
89
0
91
42
5
6
45
1.52
41114--41166
22
2.4
22
96
0
97
49
9
0
41
1.35
41188--41222
11
3.2
11
92
8
54
8
14
8
68
1.38
42973--43044
22
3.3
21
70
14
56
41
9
9
38
1.71
42971--43059
44
2.0
44
93
0
151
40
7
12
39
1.72
42990--43059
22
3.2
22
67
15
63
38
7
12
41
1.71
45844--45901
2
29.0
2
100
0
116
50
0
0
50
1.00
58137--58239
54
1.9
54
88
7
156
50
6
3
38
1.47
61077--61133
25
2.3
25
87
0
78
26
1
21
50
1.58
61120--61178
24
2.4
24
77
8
66
16
0
28
54
1.43
61263--61376
26
4.3
26
79
10
124
57
7
7
27
1.55
61273--61375
53
1.9
55
92
4
174
56
7
7
28
1.55
62178--62230
6
8.8
6
81
8
54
30
1
13
54
1.49
62137--62188
18
2.9
16
81
18
59
36
3
11
48
1.58
62179--62242
18
3.6
18
78
0
65
29
3
10
56
1.49
62178--62242
30
2.2
30
86
10
89
30
3
10
55
1.50
62839--62922
20
4.2
20
70
8
71
33
8
17
40
1.80
66632--66671
21
2.0
20
90
5
62
25
0
2
72
0.97
66992--67042
22
2.4
21
90
6
84
54
5
11
27
1.59

Tables:   1

The End!