genome.fa.s5114.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005114.1 Hibiscus syriacus cultivar Beakdansim tig00011501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90943

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915--953	18	2.2	17	90	4	60	64	5	0	30	1.15
5098--5173	2	39.0	2	92	5	129	48	0	1	50	1.09
6472--6602	68	1.9	68	95	0	235	32	24	16	26	1.96
6644--6696	21	2.5	21	75	6	63	20	24	18	35	1.95
6686--6758	21	3.5	21	90	1	103	39	17	21	20	1.92
6747--6841	20	4.7	20	85	2	109	34	27	17	20	1.95
6744--6821	41	1.9	41	94	0	138	38	26	16	17	1.92
7028--7090	22	2.9	22	97	0	117	20	46	15	17	1.85
7353--7411	20	3.0	20	87	0	73	15	18	22	44	1.87
7548--7602	25	2.2	24	78	15	58	20	9	18	52	1.71
8731--8778	18	2.7	18	93	0	87	27	45	12	14	1.81
9326--9370	20	2.3	20	84	3	65	37	15	24	22	1.93
9354--9450	19	5.6	19	71	22	97	46	21	19	12	1.83
9370--9428	14	3.9	14	76	20	64	49	23	16	10	1.77
9354--9445	33	2.8	33	98	0	175	47	21	18	11	1.80
9457--9533	33	2.3	33	97	0	145	12	19	19	48	1.81
9478--9536	19	3.4	19	68	22	65	15	18	18	47	1.83
9543--9581	20	2.0	20	94	0	69	25	12	28	33	1.93
9931--9998	21	3.3	21	70	11	61	25	38	16	20	1.92
9924--10009	40	2.1	40	86	4	118	23	39	15	22	1.91
11632--11680	20	2.5	20	80	3	64	12	24	22	40	1.88
11943--12018	21	3.7	21	82	10	111	15	17	26	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11908--12038	20	6.4	20	78	10	131	20	18	26	34	1.96
11924--12041	41	2.9	41	96	0	209	18	17	25	38	1.93
12027--12078	20	2.5	21	87	3	70	21	23	17	38	1.93
12068--12120	21	2.5	22	78	6	65	33	18	24	22	1.97
13401--13647	130	1.9	128	85	3	343	32	17	17	32	1.93
14797--14946	75	2.0	75	93	0	255	48	10	3	38	1.53
15460--15495	6	6.0	6	86	0	54	13	30	0	55	1.39
21689--21875	60	3.1	59	81	4	198	38	4	22	34	1.75
21687--21859	59	2.9	59	81	3	195	41	4	20	33	1.73
24714--24748	4	8.8	4	87	0	52	22	2	25	48	1.64
26911--26979	31	2.3	30	87	5	102	42	13	11	33	1.80
27851--27925	31	2.5	31	91	2	116	37	12	12	38	1.79
34209--34270	26	2.4	26	97	0	115	48	12	16	22	1.80
35026--35496	81	5.7	81	78	7	466	30	24	20	24	1.98
35002--35488	165	2.9	165	85	2	670	30	24	20	25	1.98
35002--35496	84	6.0	82	78	6	489	30	24	20	25	1.98
36748--36792	21	2.1	21	87	0	63	31	28	24	15	1.96
37353--37387	18	1.9	18	88	11	54	54	5	17	22	1.64
37444--37487	22	2.0	22	86	4	63	45	0	22	31	1.53
38266--39016	149	5.0	149	99	0	1466	27	16	20	35	1.94
38995--39039	23	2.0	23	86	0	63	20	24	28	26	1.99
41956--42000	21	2.1	21	87	0	63	31	28	24	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42586--42620	18	1.9	18	88	11	54	54	5	17	22	1.64
42677--42720	22	2.0	22	86	4	63	45	0	22	31	1.53
43495--44245	149	5.0	149	99	0	1475	27	16	20	35	1.95
44224--44268	23	2.0	23	86	0	63	20	24	28	26	1.99
44904--44940	10	3.8	10	83	16	51	45	8	0	45	1.32
44967--45224	37	7.2	35	73	21	180	46	3	4	44	1.42
44952--45180	37	6.1	37	76	16	211	45	4	5	44	1.46
44967--45224	111	2.4	110	78	15	261	46	3	4	44	1.42
45219--45344	55	2.3	58	74	13	138	38	2	7	50	1.44
45333--45394	13	4.8	13	75	13	56	17	1	3	77	0.98
45339--45394	19	2.9	19	80	19	71	17	1	1	78	0.92
46675--46703	13	2.2	13	100	0	58	6	6	6	79	1.06
53016--53084	21	3.2	21	85	6	84	20	33	26	20	1.97
53004--53086	23	3.8	22	85	6	105	21	31	26	20	1.98
54650--54690	18	2.3	18	87	8	57	43	19	34	2	1.64
59791--59839	22	2.2	22	96	0	89	22	34	14	28	1.93
65082--65145	21	3.0	21	84	4	92	25	26	21	26	2.00
65922--65970	25	2.0	23	81	14	55	32	2	18	46	1.60
70768--70805	19	2.0	20	89	5	60	7	31	0	60	1.25
71735--71775	21	2.0	21	100	0	82	24	26	24	24	2.00
75390--75433	18	2.4	19	81	11	56	54	2	2	40	1.25
75396--75446	18	2.9	17	82	2	57	56	1	1	39	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77181--77308	60	2.1	60	82	2	150	33	10	18	36	1.86
77194--77327	60	2.2	60	80	5	137	32	11	17	38	1.87
79076--79110	18	1.9	18	88	11	54	40	28	5	25	1.78
80158--80188	2	15.5	2	100	0	62	0	48	0	51	1.00

Tables:   1

The End!