genome.fa.s5116.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005116.1 Hibiscus syriacus cultivar Beakdansim tig00011503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178380

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20--100	34	2.4	33	87	4	117	45	19	20	13	1.84
20--79	14	3.4	19	71	23	67	45	16	21	16	1.86
106--305	19	11.7	19	67	21	122	11	21	21	46	1.82
110--305	33	5.8	33	81	9	236	11	20	21	45	1.83
106--312	103	2.0	103	88	3	310	12	20	21	45	1.84
2601--2633	12	2.8	12	100	0	66	0	27	0	72	0.85
2808--2861	24	2.2	24	93	0	90	40	20	18	20	1.91
3704--3974	20	13.4	20	82	2	317	19	21	21	38	1.94
3704--3974	41	6.7	41	93	1	395	19	21	21	38	1.94
3704--3974	122	2.2	121	91	0	434	19	21	21	38	1.94
3971--4016	21	2.2	21	84	7	58	36	17	26	19	1.94
7870--7905	18	2.0	18	100	0	72	27	16	11	44	1.82
10267--10316	21	2.4	22	83	10	68	70	6	2	22	1.20
11784--11808	6	4.2	6	100	0	50	32	0	32	36	1.58
11871--11963	21	4.6	21	74	8	102	34	25	17	22	1.96
11848--11963	60	1.9	61	91	3	189	37	25	17	20	1.94
11911--11984	20	3.7	20	74	3	76	39	25	20	14	1.91
11894--11983	41	2.2	41	95	0	162	36	26	18	17	1.94
18420--18471	25	2.1	25	100	0	104	26	0	23	50	1.50
35678--35724	3	15.7	3	100	0	94	31	0	0	68	0.90
51430--51461	2	16.0	2	100	0	64	50	0	0	50	1.00
55487--55537	23	2.3	23	83	12	63	52	0	5	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56776--56808	7	4.7	7	92	0	57	42	0	57	0	0.98
77856--77923	31	2.2	31	94	5	120	33	17	25	23	1.96
82837--82940	45	2.3	45	83	3	120	35	20	21	23	1.96
89880--90171	146	2.0	147	97	2	554	39	18	16	25	1.91
91719--91786	29	2.4	28	87	2	91	26	26	32	14	1.95
91723--91786	28	2.2	29	86	2	85	26	28	31	14	1.95
100633--100669	2	18.5	2	100	0	74	51	0	0	48	1.00
105722--105750	13	2.1	14	93	6	51	62	0	0	37	0.96
114829--114855	2	13.5	2	100	0	54	48	0	0	51	1.00
115208--115235	2	14.0	2	100	0	56	0	50	0	50	1.00
115235--115260	2	13.0	2	100	0	52	50	0	0	50	1.00
115710--115789	41	2.0	38	85	7	106	41	26	8	23	1.83
128179--128274	19	4.7	19	74	15	75	35	6	28	30	1.82
128681--128818	61	2.2	63	92	3	226	33	25	21	20	1.97
128749--128896	40	3.7	40	96	0	269	35	22	20	20	1.96
128681--128837	61	2.5	60	88	5	199	34	24	21	20	1.97
128939--129011	20	3.6	20	72	17	78	21	20	27	30	1.98
128965--129033	21	3.3	21	73	18	72	18	15	26	39	1.91
128939--129028	41	2.2	41	93	0	153	20	18	26	34	1.96
129097--129133	19	1.9	19	94	0	65	21	16	29	32	1.95
130038--130085	22	2.4	19	83	13	60	35	0	6	58	1.23
132006--132065	29	2.0	30	83	3	77	43	35	3	18	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134952--135007	29	1.9	29	85	7	78	41	1	28	28	1.66
136298--136351	28	1.9	28	96	0	99	29	27	24	18	1.98
139124--139153	15	2.0	15	100	0	60	13	26	46	13	1.80
149975--150001	11	2.5	11	100	0	54	48	14	0	37	1.45
150728--150768	21	1.9	22	85	5	57	63	4	2	29	1.28
158775--158805	6	5.2	6	100	0	62	16	35	16	32	1.91
163840--164068	57	4.0	57	93	0	377	14	20	30	34	1.92
169164--169220	24	2.1	28	75	24	77	29	19	7	43	1.77
169170--169220	24	2.1	25	96	3	95	27	17	7	47	1.75
173629--173679	25	2.0	25	96	0	93	41	19	7	31	1.80
177836--177894	22	2.7	22	86	5	84	25	28	27	18	1.98

Tables:   1

The End!