Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005118.1 Hibiscus syriacus cultivar Beakdansim tig00011505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57386

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1101--1205
52
2.0
52
94
3
185
25
23
16
34
1.95
2230--2275
18
2.7
17
83
6
58
34
8
30
26
1.86
2800--2871
38
1.9
38
94
2
128
36
37
13
12
1.83
3293--3321
14
2.1
14
100
0
58
27
6
34
31
1.83
12628--12674
21
2.3
21
85
3
69
38
12
19
29
1.89
17379--17441
21
2.9
23
84
13
89
42
6
3
47
1.44
17415--17559
40
3.7
39
76
11
129
46
6
5
41
1.54
18130--18171
14
3.0
14
82
0
57
57
4
0
38
1.20
28888--28984
42
2.3
41
78
1
104
24
20
23
30
1.98
29104--29193
42
2.1
42
93
0
153
25
24
17
32
1.97
29104--29314
42
5.1
42
71
11
141
28
21
20
29
1.98
29235--29337
42
2.5
42
84
7
122
26
23
22
28
1.99
29113--29334
122
1.8
122
87
1
329
28
21
19
29
1.98
29756--29965
53
3.9
53
84
1
233
29
20
26
23
1.99
32903--32944
20
2.2
19
86
4
57
64
0
0
35
0.94
32838--33055
120
1.8
120
82
5
280
44
8
9
36
1.68
33073--33112
20
2.1
18
86
9
53
62
0
2
35
1.09
34512--34582
3
25.0
3
77
16
53
60
1
0
38
1.06
34533--34586
13
4.2
14
73
20
55
66
1
0
31
1.02
34535--34579
16
2.8
16
82
0
54
66
2
0
31
1.04
34546--34592
23
2.0
24
88
12
71
70
4
0
25
1.05
35044--36361
113
11.7
112
89
2
1851
27
20
15
36
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39619--39838
114
1.9
114
90
0
350
29
20
16
33
1.95
41981--42076
18
5.4
18
73
15
76
4
21
0
73
0.99
41975--42104
7
16.3
7
69
23
55
4
20
1
73
1.08
41975--42076
17
5.9
16
73
22
66
3
21
0
74
0.98
46336--46413
33
2.4
33
95
0
138
37
2
11
48
1.53
46412--46462
22
2.3
24
77
16
56
43
5
11
39
1.66
46500--46526
2
13.5
2
100
0
54
51
0
0
48
1.00
47147--47184
2
20.0
2
89
10
62
50
0
0
50
1.00
47220--47245
12
2.2
12
100
0
52
34
0
15
50
1.45
47816--47938
2
62.5
2
77
15
114
43
4
1
49
1.33
47799--47938
20
6.5
22
77
14
125
42
5
1
50
1.32
48166--48211
18
2.5
19
79
13
51
50
2
0
47
1.13
48242--48284
14
3.2
13
81
18
52
44
0
11
44
1.40
53026--53062
15
2.3
17
86
9
51
37
0
0
62
0.96
53019--53075
25
2.3
25
85
8
73
31
0
0
68
0.90
53558--53602
23
2.0
21
83
8
54
26
4
2
66
1.22
55764--55816
21
2.5
21
79
11
56
50
11
28
9
1.69

Tables:   1

The End!