Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000512.1 Hibiscus syriacus cultivar Beakdansim tig00000976_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79488

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
297--338
13
3.3
13
83
12
52
50
0
2
47
1.14
3851--3944
46
2.0
46
85
0
125
30
24
20
24
1.98
5032--5069
2
19.0
2
100
0
76
50
0
0
50
1.00
6328--6391
21
3.0
21
90
0
92
50
29
0
20
1.49
6332--6392
7
8.7
7
79
0
68
49
31
0
19
1.49
7548--7607
31
2.0
30
83
9
77
33
8
11
46
1.70
21992--22021
2
15.5
2
93
6
53
50
0
0
50
1.00
25025--25094
23
3.0
23
80
0
86
20
21
27
31
1.98
25122--25155
17
2.1
17
88
5
52
32
23
5
38
1.79
25385--25417
14
2.3
15
94
5
59
54
15
15
15
1.71
32228--32285
28
2.1
28
96
0
107
12
18
10
58
1.61
32908--32947
19
2.1
19
86
9
55
32
15
35
17
1.91
33501--33559
22
2.6
23
83
2
75
20
16
22
40
1.91
33543--33599
24
2.4
24
90
0
87
24
21
22
31
1.98
39620--39858
29
8.3
29
75
9
195
46
14
5
33
1.68
39639--39858
87
2.5
84
78
11
221
46
14
5
33
1.67
39694--39890
87
2.3
86
80
10
204
49
13
5
32
1.63
39843--39914
29
2.5
29
78
14
78
48
13
2
34
1.57
41711--41768
28
2.1
28
87
6
82
60
1
0
37
1.07
42075--42150
35
2.2
35
90
0
116
38
23
2
35
1.69
42547--42794
130
1.9
130
91
0
406
36
14
12
36
1.85
42561--42825
130
2.0
129
80
4
291
39
12
13
34
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43253--43284
15
2.0
17
88
11
50
62
6
3
28
1.34
43315--43353
16
2.3
16
86
8
51
51
10
0
38
1.36
43326--43359
16
2.1
16
94
0
59
47
5
0
47
1.26
44991--45061
30
2.4
30
83
2
90
35
7
21
36
1.80
51297--51321
4
6.2
4
100
0
50
52
0
0
48
1.00
52279--52455
66
2.8
65
93
3
306
45
6
15
32
1.71
57820--57858
19
2.1
19
90
0
60
38
0
2
58
1.12
57835--57964
60
2.2
60
83
5
156
36
15
4
43
1.67
59304--59526
110
2.0
110
93
0
383
26
13
20
39
1.89
62368--62399
3
10.7
3
100
0
64
31
0
0
68
0.90
64944--64992
17
3.0
17
73
8
57
34
6
10
48
1.62
64944--65000
16
3.6
15
71
19
53
29
5
10
54
1.56
69789--69828
16
2.5
16
83
0
53
45
27
5
22
1.73
70221--70570
103
3.3
104
80
7
413
31
16
10
41
1.82
70221--70534
108
3.0
104
81
6
400
31
16
10
41
1.82
70648--70707
31
1.9
32
86
6
88
31
11
15
41
1.82
70781--70949
63
2.6
65
83
9
202
30
9
14
45
1.77
70993--71116
29
4.2
29
83
8
135
29
10
15
45
1.79
71152--71209
30
2.0
30
93
3
100
31
13
10
44
1.78
71152--71212
29
2.1
29
90
6
79
34
13
9
42
1.77
71062--71273
91
2.3
90
82
9
268
29
12
13
44
1.81
71493--71833
133
2.5
133
89
1
495
24
30
19
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78212--78291
27
3.1
27
60
23
64
33
11
17
37
1.85
78192--78291
49
2.0
49
100
0
200
34
11
19
36
1.87

Tables:   1

The End!