genome.fa.s5120.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005120.1 Hibiscus syriacus cultivar Beakdansim tig00011518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60237

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148--1334	31	6.0	31	89	1	286	39	21	18	20	1.93
2054--2178	64	2.0	64	84	6	164	28	17	18	36	1.94
2054--2195	64	2.2	64	81	5	162	27	19	19	33	1.96
3208--3341	60	2.2	60	80	2	144	41	2	24	30	1.70
4076--4114	20	2.0	19	85	5	51	48	2	0	48	1.15
5172--5196	7	3.6	7	100	0	50	12	0	0	88	0.53
5206--5247	19	2.3	18	80	8	50	52	0	2	45	1.13
10201--10463	54	4.9	54	94	0	445	28	19	21	30	1.97
10200--10535	54	6.2	53	85	6	381	28	19	22	30	1.98
10199--10518	108	3.0	109	89	3	461	29	19	22	29	1.98
10433--10802	55	6.8	55	84	3	401	34	20	19	25	1.96
10453--10802	108	3.2	109	84	3	429	34	20	19	25	1.96
10453--10800	54	6.4	53	86	4	374	34	20	19	25	1.96
11075--11177	45	2.3	45	86	1	134	50	5	18	25	1.69
11147--11309	45	3.6	46	79	10	167	39	9	22	28	1.85
13221--13344	59	2.1	59	84	3	160	28	16	24	30	1.97
13642--13726	32	2.7	32	90	0	125	34	15	12	37	1.86
13668--13748	32	2.5	32	78	4	83	41	8	12	37	1.73
19161--19206	18	2.6	18	89	0	65	34	43	8	13	1.74
19176--19213	6	6.5	6	87	3	51	31	50	13	5	1.63
20858--20938	27	2.9	28	73	10	76	50	8	8	32	1.63
21274--21317	19	2.4	19	80	3	54	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21275--21310	19	1.9	19	88	5	56	72	0	0	27	0.85
23192--23217	2	13.0	2	100	0	52	50	0	0	50	1.00
36959--36992	15	2.4	15	90	9	54	47	29	5	17	1.71
47680--47715	12	2.8	13	87	8	56	58	5	0	36	1.22
47680--47720	12	3.3	12	89	3	55	58	4	0	36	1.20
48829--48885	30	1.9	30	96	0	105	36	15	12	35	1.85
48830--48898	30	2.3	30	89	2	102	40	14	8	36	1.77
51333--51410	32	2.6	30	82	13	90	43	0	3	52	1.19
51333--51394	27	2.1	30	85	11	85	40	0	1	58	1.08
51452--51502	23	2.2	23	82	0	57	45	1	1	50	1.24
51499--51653	28	5.8	26	68	19	79	52	1	0	44	1.16
51489--51568	30	2.7	30	75	18	85	52	2	0	45	1.14
51520--51587	30	2.3	30	78	12	77	54	2	0	42	1.15
51609--51652	22	2.0	23	86	4	63	54	0	0	45	0.99
52119--52185	30	2.2	31	86	2	91	19	13	13	53	1.72
52799--52904	28	3.6	28	78	15	99	37	7	14	40	1.74
59802--59834	14	2.4	14	94	0	57	12	12	18	57	1.64
59812--59867	24	2.3	25	84	9	80	16	8	14	60	1.57
59827--59882	24	2.3	24	84	0	67	17	8	12	60	1.57
60093--60194	37	3.0	33	71	13	98	11	14	16	56	1.66
60070--60158	23	3.8	23	82	2	97	12	11	16	59	1.61
60056--60179	10	11.0	10	68	17	50	12	13	16	57	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60069--60179	47	2.4	47	76	0	114	11	14	17	56	1.66

Tables:   1

The End!