Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005121.1 Hibiscus syriacus cultivar Beakdansim tig00011520_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56799

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6012--6217
74
2.8
74
86
1
259
23
30
23
21
1.99
6777--7012
118
2.0
118
93
1
402
28
28
11
32
1.91
7011--7117
37
2.9
37
95
0
187
42
14
12
30
1.83
7671--7787
40
3.0
38
80
13
139
29
0
3
66
1.13
7671--7787
38
3.0
38
82
15
132
29
0
3
66
1.13
7682--7859
4
43.5
4
69
16
80
24
1
2
70
1.10
7671--7859
42
4.9
40
74
15
127
25
1
3
69
1.12
7764--7800
13
2.8
14
88
12
60
18
0
5
75
0.99
25195--25273
33
2.4
33
91
0
122
12
7
32
46
1.70
25255--25334
32
2.5
32
80
7
101
27
10
30
32
1.89
25333--25434
28
3.7
28
86
2
152
16
7
32
43
1.77
25815--25870
16
3.4
16
78
9
67
26
30
5
37
1.79
36083--36188
42
2.5
43
76
3
124
33
16
18
32
1.93
36161--36633
128
3.7
128
76
10
383
29
17
17
35
1.93
37535--37714
99
1.8
98
86
5
265
39
11
20
28
1.87
37621--37909
114
2.5
114
84
3
359
42
9
16
31
1.80
37616--37942
114
2.9
112
75
11
297
42
10
17
30
1.82
40006--40049
20
2.2
20
100
0
88
43
18
18
20
1.89
41772--41821
2
25.0
2
100
0
100
50
0
0
50
1.00
41803--41868
23
2.6
25
86
9
82
43
6
1
48
1.36
48949--48981
17
1.9
17
88
11
50
33
0
0
66
0.92
52714--52764
26
2.0
26
92
0
84
62
3
5
27
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54903--54952
23
2.2
23
100
0
100
38
8
24
30
1.84

Tables:   1

The End!