Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005123.1 Hibiscus syriacus cultivar Beakdansim tig00011522_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68205

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2199--3341
179
6.4
181
89
3
1575
40
14
17
27
1.88
2199--3338
539
2.1
537
87
3
1650
41
14
17
27
1.88
15031--15108
30
2.6
30
78
11
79
37
6
17
38
1.76
15378--15412
18
1.9
18
88
0
52
54
17
5
22
1.64
17833--17894
30
2.1
30
85
11
85
33
4
1
59
1.28
19575--19685
29
3.8
28
70
14
80
45
9
19
25
1.81
20141--20202
32
2.0
31
84
9
81
61
3
9
25
1.42
24621--24678
30
1.9
30
86
13
84
46
6
20
25
1.75
24634--24729
29
3.3
29
80
11
106
45
10
18
25
1.81
25161--25222
32
2.0
31
90
3
97
59
3
11
25
1.46
25889--25979
44
2.1
44
97
0
173
16
34
19
29
1.94
26498--26541
12
3.8
11
85
8
52
70
2
0
27
0.99
28686--28765
2
40.0
2
100
0
160
50
0
0
50
1.00
30006--30049
2
22.0
2
100
0
88
50
0
0
50
1.00
30465--30841
184
2.0
186
89
2
580
41
3
9
45
1.53
31083--31113
14
2.2
14
100
0
62
41
19
38
0
1.51
31088--31126
14
2.8
14
88
0
51
43
25
28
2
1.68
37577--37614
2
19.0
2
100
0
76
50
0
0
50
1.00
39018--39076
20
2.9
21
78
14
61
42
10
0
47
1.37
42310--42367
20
2.9
20
89
0
89
31
25
18
24
1.98
62315--62407
43
2.2
43
100
0
186
33
12
17
36
1.88
67031--67075
3
16.0
3
86
13
69
64
0
0
35
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67031--67075
11
4.0
11
86
13
65
64
0
0
35
0.94
67033--67066
8
4.1
8
96
3
59
64
0
0
35
0.94
67633--68081
216
2.1
218
92
1
749
31
21
18
28
1.97

Tables:   1

The End!