Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005125.1 Hibiscus syriacus cultivar Beakdansim tig00011526_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92500

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6069--6101
15
2.2
15
100
0
66
12
51
24
12
1.73
13855--13923
34
2.0
34
97
0
129
49
11
18
20
1.78
19566--19592
14
1.9
14
100
0
54
22
3
7
66
1.33
27491--27524
18
1.9
17
88
5
50
29
0
5
64
1.17
27892--27941
26
2.0
25
84
4
64
48
0
10
42
1.37
31439--31488
15
3.2
15
75
8
55
56
6
0
38
1.24
34511--34627
60
2.0
60
82
0
144
27
16
17
38
1.91
34841--34978
60
2.3
60
83
2
170
31
16
20
31
1.95
35040--35080
20
2.0
21
90
4
66
65
0
0
34
0.93
43232--43260
15
1.9
15
100
0
58
27
10
6
55
1.59
45458--45489
15
2.1
16
94
5
57
43
0
6
50
1.27
47829--47881
15
3.3
17
73
21
60
37
20
0
41
1.53
55160--55226
22
3.0
22
100
0
134
26
26
26
19
1.99
55446--55505
30
2.0
31
90
3
95
33
21
6
38
1.80
55520--55590
29
2.5
28
90
2
106
36
14
9
39
1.79
55892--56063
66
2.6
66
81
6
186
18
26
26
27
1.98
56021--56063
21
2.0
21
86
0
59
16
25
27
30
1.97
62093--62159
22
3.0
22
100
0
134
26
26
26
19
1.99
62377--62436
30
2.0
31
90
3
95
33
21
6
38
1.80
62451--62522
29
2.5
29
90
0
108
37
13
9
38
1.78
62825--62976
68
2.3
67
87
1
205
18
27
26
26
1.98
62956--62998
21
2.0
21
86
0
59
16
25
27
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62826--62998
68
2.6
67
84
4
188
18
27
26
27
1.98
64970--65003
16
2.1
16
89
10
52
61
0
0
38
0.96
65821--65861
15
2.8
16
75
17
52
53
0
0
46
1.00
65832--65858
14
1.9
14
100
0
54
51
0
0
48
1.00
66712--66761
26
1.9
26
100
0
100
18
2
8
72
1.19
82854--82959
55
1.9
55
94
3
187
38
5
3
51
1.43
83336--83815
120
4.0
119
86
3
613
39
9
3
47
1.53
83337--83820
239
2.0
243
89
1
751
39
9
3
47
1.53
86144--86189
18
2.6
18
86
6
58
52
4
0
43
1.21
86143--86190
21
2.5
18
83
10
60
52
4
0
43
1.20
88247--88285
20
2.0
20
84
0
51
15
20
35
28
1.93
90843--90902
22
2.7
22
87
7
77
18
23
33
25
1.97

Tables:   1

The End!