Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005126.1 Hibiscus syriacus cultivar Beakdansim tig00011528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78069

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
733--763
14
2.3
14
94
5
55
51
3
0
45
1.17
5449--5556
52
2.1
53
94
3
193
28
16
14
39
1.88
13022--13103
43
1.9
43
87
5
121
28
6
8
57
1.52
13048--13374
42
7.7
42
77
9
292
26
17
6
49
1.71
13048--13402
83
4.2
82
73
13
283
26
17
6
49
1.71
13865--13945
41
2.0
40
80
7
92
46
7
12
33
1.69
15688--15743
15
3.5
15
83
11
76
66
1
0
32
1.03
15688--15742
17
3.4
16
82
9
76
67
1
0
30
1.01
15816--15893
40
2.0
40
92
0
129
35
14
17
32
1.90
17104--17132
14
2.0
15
93
6
51
51
0
0
48
1.00
20102--20198
44
2.2
44
96
0
176
44
9
8
38
1.67
22254--22306
21
2.5
21
93
0
88
35
11
13
39
1.80
23133--23456
68
4.8
68
88
0
459
31
14
24
30
1.94
23408--23728
81
4.0
80
86
3
403
34
12
25
28
1.92
30777--30853
15
5.4
15
77
12
72
12
64
14
7
1.47
30764--30832
26
2.7
26
100
0
138
14
62
15
7
1.53
41267--41337
35
2.0
35
91
0
115
47
16
7
28
1.73
42411--42470
2
30.0
2
100
0
120
50
0
0
50
1.00
43233--43273
20
2.0
20
100
0
82
19
14
29
36
1.92
43564--43600
17
2.2
17
90
0
56
32
0
16
51
1.45
51563--51623
13
4.6
14
80
13
76
70
0
22
6
1.10
51563--51624
26
2.4
26
100
0
124
69
0
24
6
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51563--51642
13
6.5
13
72
23
75
68
0
25
6
1.12
56922--56982
20
3.0
20
90
0
86
40
21
14
22
1.90
64733--64813
23
3.8
21
83
6
83
25
32
24
17
1.97
64733--64793
23
2.7
22
89
2
86
24
32
24
18
1.97
73474--73517
13
3.6
12
79
14
54
65
0
27
6
1.17

Tables:   1

The End!