genome.fa.s5129.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005129.1 Hibiscus syriacus cultivar Beakdansim tig00011547_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  545926

Tables:   1   2   3   

This is table  3  of  3  ( 290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451256--451325	21	3.3	21	77	0	59	38	12	14	34	1.84
455054--455090	18	2.1	18	89	0	56	54	5	2	37	1.38
456046--456727	251	2.7	253	87	4	932	24	13	21	40	1.89
461855--461894	20	2.0	19	85	9	53	40	7	12	40	1.71
464001--464034	3	11.0	3	93	6	59	64	0	35	0	0.94
466063--466142	26	3.1	26	98	0	151	22	7	8	61	1.51
469538--469565	14	2.0	14	100	0	56	57	14	14	14	1.66
478134--478164	16	1.9	16	93	0	53	58	0	0	41	0.98
482177--482254	34	2.3	34	84	0	102	37	8	12	41	1.75
482175--482258	17	5.0	16	71	15	62	38	9	13	39	1.77
483816--483855	15	2.5	17	92	8	66	50	2	0	47	1.14
484802--484835	8	4.2	8	92	0	59	58	0	2	38	1.13
488834--488951	21	5.6	21	84	4	132	41	21	20	16	1.90
488839--488947	42	2.6	42	86	5	157	42	20	20	17	1.90
491535--491580	17	2.8	16	87	9	65	76	0	23	0	0.79
491535--491579	5	8.2	5	83	16	54	75	0	24	0	0.80
491535--491579	11	4.1	11	83	8	56	75	0	24	0	0.80
492884--493113	123	1.9	120	81	7	266	31	17	25	24	1.97
494590--495658	218	4.9	218	93	1	1768	27	14	29	27	1.95
494590--495658	55	19.6	55	92	1	1690	27	14	29	27	1.95
495998--496034	16	2.3	17	81	13	51	59	0	5	35	1.20
497540--497617	18	4.6	16	71	19	61	60	1	2	35	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498796--498838	22	1.9	23	85	4	61	23	2	6	67	1.27
511495--511544	10	5.2	10	76	9	50	40	0	2	58	1.10
511503--511543	14	2.9	14	81	0	55	36	0	2	60	1.10
512658--512702	21	2.1	21	87	0	63	33	15	6	44	1.73
513050--513109	28	2.1	28	100	0	120	33	3	10	53	1.51
517640--517679	21	1.9	21	100	0	80	30	15	25	30	1.95
518604--518635	12	2.7	12	100	0	64	34	25	25	15	1.95
519408--519489	31	2.8	29	78	7	83	32	15	6	45	1.71
520457--520510	21	2.6	21	96	0	99	25	18	25	29	1.98
524387--524433	20	2.3	21	88	3	69	34	10	23	31	1.89
527233--527288	28	1.9	30	85	7	80	44	3	1	50	1.29
527240--527303	28	2.2	29	78	8	69	45	4	3	46	1.39
527921--527954	17	1.9	18	88	5	52	58	5	2	32	1.37
529412--529458	20	2.4	19	86	10	67	55	8	17	19	1.67
529200--529668	182	2.6	181	88	2	660	42	14	17	26	1.87
529595--529632	20	1.9	20	100	0	76	52	13	15	18	1.74
531861--531925	21	3.1	21	79	0	76	38	13	30	16	1.88
531959--532019	32	1.9	32	93	0	104	31	0	45	22	1.53
533805--533853	19	2.6	19	93	0	80	30	2	10	57	1.43
533972--535739	200	8.9	200	97	1	3238	36	15	17	30	1.91
537204--537292	12	7.4	12	85	0	88	34	6	34	23	1.81
537201--537289	18	5.1	18	74	8	76	35	6	34	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537216--537293	3	26.0	3	77	0	75	34	5	34	25	1.78
537204--537280	36	2.1	36	87	0	109	35	7	35	22	1.83
538303--538340	15	2.5	15	80	16	51	18	0	21	60	1.36
538415--538453	20	2.0	20	89	0	60	28	12	7	51	1.67
538759--539099	182	1.9	182	90	2	542	34	13	16	34	1.88
541563--541621	25	2.4	25	88	0	82	33	8	15	42	1.77

Tables:   1   2   3

The End!