genome.fa.s5130.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005130.1 Hibiscus syriacus cultivar Beakdansim tig00011548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78675

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10259--10460	54	3.7	54	83	0	260	27	19	16	37	1.93
10259--10459	108	1.9	108	88	0	303	26	19	16	37	1.93
17449--17570	62	2.0	62	91	0	199	36	26	18	18	1.94
20644--20695	13	3.8	13	84	5	59	76	0	3	19	0.93
20647--20695	19	2.7	17	75	12	53	75	0	4	20	0.96
20647--20697	18	2.7	19	75	19	54	74	0	3	21	0.98
21474--21552	33	2.4	33	93	0	131	34	8	16	40	1.80
22549--22975	148	2.8	152	86	6	547	25	21	24	29	1.99
22699--23304	84	7.3	84	80	6	677	25	19	24	30	1.98
22699--23304	165	3.7	162	82	6	700	25	19	24	30	1.98
22699--23304	249	2.4	249	91	1	986	25	19	24	30	1.98
27387--27418	13	2.3	15	89	10	50	81	0	3	15	0.82
32766--32815	20	2.5	20	93	0	82	42	16	18	24	1.89
37988--38029	4	10.2	4	85	10	50	71	0	2	26	0.98
37983--38029	12	3.8	12	83	13	51	70	0	4	25	1.05
38269--38369	31	3.2	30	75	15	98	36	11	6	44	1.68
40867--40944	21	3.8	21	94	1	131	52	28	2	16	1.57
41165--41205	2	20.5	2	100	0	82	51	0	0	48	1.00
41488--41542	28	2.0	26	83	13	67	36	3	3	56	1.34
43430--43469	18	2.2	18	90	0	62	25	25	27	22	2.00
44857--44893	19	1.9	19	88	0	56	48	13	2	35	1.57
45199--45245	20	2.1	21	85	14	60	25	23	6	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50831--50867	19	1.9	19	88	0	56	48	13	2	35	1.57
52697--52756	3	20.0	3	73	13	52	56	0	40	3	1.16
52694--52753	24	2.5	24	100	0	120	53	0	43	3	1.17
54367--54671	49	6.3	49	81	3	337	33	13	23	29	1.93
54367--54671	97	3.1	96	88	2	423	33	13	23	29	1.93
54384--54689	146	2.1	146	79	4	339	33	13	23	29	1.93
59789--59906	49	2.4	49	85	0	164	34	15	22	27	1.94
59789--59942	49	3.1	48	78	5	146	34	15	24	25	1.95
59951--59999	24	2.0	24	92	7	82	42	20	16	20	1.89
61242--61275	17	2.0	17	100	0	68	47	5	11	35	1.65
61401--61459	23	2.6	23	91	0	91	42	8	16	32	1.79
61373--61535	87	1.9	87	94	0	290	41	12	14	31	1.83
61918--62269	182	1.9	181	88	1	535	26	16	13	44	1.84
62098--62431	162	2.1	162	93	1	571	28	15	12	43	1.84
65205--65247	21	2.0	21	90	0	68	32	27	23	16	1.96
65773--66196	103	4.1	103	95	0	758	26	12	23	37	1.91
66217--66275	23	2.5	24	86	8	86	23	23	23	28	1.99
72315--72357	21	2.0	21	90	0	68	32	27	23	16	1.96
72385--72422	20	1.9	20	88	0	58	23	34	31	10	1.89
72913--73336	103	4.1	103	94	0	749	25	12	24	37	1.90
73355--73415	23	2.7	23	84	5	79	21	29	22	26	1.99

Tables:   1

The End!