Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005131.1 Hibiscus syriacus cultivar Beakdansim tig00011550_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73899

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2115--2605
183
2.7
183
95
1
882
33
16
15
34
1.90
4092--4172
3
27.0
3
78
0
81
24
34
4
35
1.77
4096--4184
12
7.4
12
81
0
79
22
34
6
35
1.81
4108--4184
36
2.1
36
92
0
127
22
35
7
35
1.83
5640--7403
199
8.9
199
96
1
3153
30
17
15
36
1.91
7522--7570
19
2.6
19
93
0
80
57
10
2
30
1.43
9457--9521
21
3.1
21
79
0
76
16
30
13
38
1.88
11742--11784
20
2.3
18
85
14
61
20
16
11
51
1.75
11747--11793
20
2.4
19
82
10
67
19
17
10
53
1.72
11927--11973
20
2.3
20
86
10
69
19
17
8
55
1.67
11714--12185
182
2.6
181
89
1
687
26
17
13
42
1.86
11714--12187
180
2.6
180
88
1
680
26
17
13
42
1.86
12252--12738
229
2.1
228
96
0
893
39
7
8
44
1.62
13432--13465
17
1.9
18
88
5
52
32
2
5
58
1.37
14096--14152
30
1.9
30
85
3
80
49
1
3
45
1.29
17045--17091
20
2.3
20
85
3
58
34
23
8
34
1.85
19309--19348
6
6.7
6
100
0
80
50
17
0
32
1.47
20982--21035
21
2.6
21
96
0
99
29
25
18
25
1.98
22019--22084
31
2.2
29
83
5
78
46
6
15
31
1.70
23672--23705
18
1.9
17
88
5
50
29
0
5
64
1.17
23801--23840
21
1.9
21
100
0
80
30
25
15
30
1.95
28376--28435
28
2.1
28
100
0
120
53
10
3
33
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28783--28827
21
2.1
21
87
0
63
44
6
15
33
1.73
33919--33953
2
17.5
2
100
0
70
48
0
0
51
1.00
40067--40098
15
2.1
15
94
0
55
9
25
12
53
1.68
41488--41517
8
3.8
8
100
0
60
66
0
0
33
0.92
43871--43945
17
4.5
16
73
18
64
34
2
1
61
1.18
44791--44830
15
2.5
17
92
8
66
47
0
2
50
1.14
44917--45026
57
1.9
57
82
10
136
44
3
6
45
1.46
46378--46435
17
3.4
17
76
9
64
36
10
10
43
1.73
46382--46459
34
2.3
35
82
8
99
41
12
8
37
1.75
50471--50501
16
1.9
16
93
0
53
41
0
0
58
0.98
58373--58400
14
2.0
14
100
0
56
14
14
14
57
1.66
58374--58413
14
2.9
14
88
0
53
15
10
12
62
1.54
61795--61874
26
3.1
26
98
0
151
61
8
7
22
1.51
63904--63938
3
11.0
3
88
11
52
0
37
0
62
0.95
63904--63938
10
3.7
9
88
11
52
0
37
0
62
0.95
63907--63938
13
2.5
13
100
0
64
0
37
0
62
0.95
63904--63944
10
4.2
10
87
9
50
0
36
0
63
0.95
66058--66097
21
2.0
19
85
9
53
40
12
7
40
1.71
67797--67827
12
2.6
12
89
0
53
51
6
25
16
1.68
71351--72089
255
2.9
253
86
4
992
40
22
13
23
1.89

Tables:   1

The End!